Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.6e-208 729.2 377 100.0
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 3.1e-159 565.5 379 77.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 5.2e-154 548.1 379 75.2
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 5.6e-148 528.1 371 75.7
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 6.4e-128 461.5 388 62.6
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 6.0e-126 454.9 357 67.2
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 1.0e-125 454.1 340 70.6
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.0e-125 454.1 357 66.9
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.3e-125 453.0 385 64.2
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 5.6e-124 448.4 334 68.0
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 6.8e-122 441.4 348 68.4
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 2.0e-121 439.9 353 63.5
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 5.8e-121 438.3 425 59.1
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.7e-120 436.8 382 61.5
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.4e-119 433.7 333 66.7
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 2.8e-115 419.5 370 58.4
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 6.2e-115 418.3 372 57.8
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 1.4e-114 417.2 350 60.9
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 6.9e-114 414.8 350 60.6
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 3.4e-113 412.5 374 57.8
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.3e-112 410.6 362 60.2
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.2e-112 409.8 369 58.0
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 2.9e-112 409.5 331 61.3
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 4.9e-112 408.7 326 64.1
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 8.4e-112 407.9 367 58.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.1e-111 407.5 325 61.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.1e-111 407.5 338 61.8
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.4e-111 407.1 358 59.2
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.9e-111 406.8 357 59.9
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 3.2e-111 406.0 342 60.2
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 4.2e-111 405.6 370 58.1
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 4.2e-111 405.6 370 58.4
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 4.2e-111 405.6 335 61.8
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.2e-110 404.1 337 59.6
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.6e-110 403.7 369 56.6
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.6e-110 403.7 352 59.7
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 4.6e-110 402.1 316 64.9
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 6.0e-110 401.7 335 60.0
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 6.0e-110 401.7 338 60.4
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 7.9e-110 401.4 307 65.8
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.0e-109 401.0 367 56.9
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.0e-109 401.0 368 58.4
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 1.7e-109 400.2 369 56.4
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 3.0e-109 399.4 325 61.8
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 3.9e-109 399.1 321 63.9
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.5e-108 397.1 372 56.2
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.3e-108 396.0 362 57.7
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.3e-108 396.0 330 60.9
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.3e-107 394.0 366 56.8
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.3e-107 394.0 369 55.8
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.1e-106 391.0 339 59.3
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 1.1e-106 391.0 322 63.4
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 1.4e-106 390.6 335 58.2
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.8e-106 390.2 364 58.5
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 4.0e-106 389.0 325 60.0
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 4.0e-106 389.0 326 58.9
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 4.0e-106 389.0 364 56.9
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 9.0e-106 387.9 369 56.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.2e-105 387.5 345 58.3
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.5e-105 387.1 362 56.6
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 2.0e-105 386.7 374 56.7
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.0e-105 386.7 357 55.7
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 2.0e-105 386.7 339 59.0
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 5.8e-105 385.2 346 58.4
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 5.8e-105 385.2 373 56.0
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 7.6e-105 384.8 319 63.6
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 9.9e-105 384.4 345 58.0
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.7e-104 383.6 374 56.1
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.7e-104 383.6 374 56.1
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 2.2e-104 383.3 340 58.5
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 2.2e-104 383.3 312 62.8
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.2e-104 383.3 362 56.1
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 3.8e-104 382.5 371 54.2
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.4e-103 379.8 399 53.4
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 4.6e-102 375.6 373 55.0
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 7.9e-102 374.8 374 54.8
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 7.9e-102 374.8 362 53.9
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 2.3e-101 373.2 365 56.2
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 3.9e-101 372.5 368 55.7
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 8.7e-101 371.3 312 63.5
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 2.8e-99 366.3 293 61.8
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 4.8e-99 365.5 320 58.8
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.7e-96 357.1 325 56.0
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 8.4e-96 354.8 326 58.3
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 5.5e-95 352.1 321 57.9
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 6.0e-94 348.6 326 57.7
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.1e-92 344.4 338 52.7
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 2.4e-90 336.7 332 53.9
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 2.4e-90 336.7 391 47.8
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.0e-89 333.6 256 65.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.4e-89 332.8 252 66.7
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 9.3e-87 324.7 270 60.4
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 1.8e-85 320.5 264 63.3
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 4.3e-84 315.8 230 68.3
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 6.3e-83 312.0 353 50.7
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.0e-80 304.7 303 51.8
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.3e-80 304.3 289 56.1
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 3.2e-79 299.7 340 46.8
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 6.1e-78 295.4 304 55.3
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.7e-75 286.2 329 45.3
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.3e-72 277.7 295 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.4e-69 267.7 311 43.4
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.8e-66 257.3 201 65.2
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.0e-65 253.8 265 52.5
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 8.5e-64 248.4 268 53.7
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.1e-62 243.8 229 58.1
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 5.2e-61 239.2 186 63.4
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 4.2e-55 219.5 344 45.3
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.2e-55 219.5 205 56.6
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.2e-54 218.0 298 38.3
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 6.8e-53 212.2 246 52.4
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 9.8e-52 208.4 159 67.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.3e-48 198.0 200 56.0
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.7e-40 171.0 288 34.0
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 5.6e-39 166.0 267 37.5
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 3.6e-38 163.3 133 60.9
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 4.6e-33 146.4 211 45.0
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 3.0e-32 143.7 223 45.3
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 6.6e-24 115.9 122 50.0
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.5e-23 114.8 111 57.7
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 4.7e-22 109.8 84 72.6
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.2e-20 105.1 84 69.0
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.9e-18 97.8 233 31.8
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 6.0e-09 66.2 62 51.6
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.1e-07 62.0 45 73.3


User provided reference genes

Program Settings