Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 4.1e-75 284.6 146 100.0
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.5e-64 249.6 146 88.4
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 6.2e-63 244.2 146 84.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 2.4e-62 242.3 146 86.3
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 3.4e-61 238.4 146 83.6
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 9.9e-61 236.9 146 82.2
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 1.4e-59 233.0 146 82.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 7.1e-59 230.7 146 81.5
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 9.3e-59 230.3 146 80.1
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 4.6e-58 228.0 146 81.5
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.3e-57 226.5 146 78.8
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-57 226.1 146 80.1
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-57 226.1 146 80.1
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-57 226.1 146 80.1
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.8e-57 226.1 146 80.1
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.3e-57 225.7 144 78.5
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.3e-57 225.7 144 78.5
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 2.3e-57 225.7 144 78.5
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 3.0e-57 225.3 146 80.8
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.9e-57 224.9 144 78.5
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 3.9e-57 224.9 147 79.6
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 5.1e-57 224.6 146 80.1
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 5.1e-57 224.6 146 80.1
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.1e-57 224.6 144 77.8
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 1.1e-56 223.4 147 79.6
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.9e-56 222.6 146 78.8
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.5e-56 222.2 146 79.5
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.5e-56 222.2 147 78.9
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.3e-56 221.9 146 80.1
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 3.3e-56 221.9 146 78.1
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 9.6e-56 220.3 146 78.1
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 9.6e-56 220.3 146 78.8
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 9.6e-56 220.3 147 76.9
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 9.6e-56 220.3 147 76.9
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.6e-55 219.5 144 77.1
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.1e-55 219.2 147 77.6
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.1e-55 219.2 147 77.6
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 2.1e-55 219.2 146 76.7
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.8e-55 218.8 146 77.4
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.7e-55 218.4 146 78.1
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 3.7e-55 218.4 147 76.9
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 3.7e-55 218.4 144 77.1
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 4.8e-55 218.0 146 78.1
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 6.2e-55 217.6 146 77.4
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 6.2e-55 217.6 146 76.7
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 8.1e-55 217.2 146 76.0
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 1.4e-54 216.5 147 77.6
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.8e-54 216.1 147 76.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.8e-54 216.1 148 76.4
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.4e-54 215.7 146 74.7
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.4e-54 215.7 146 74.7
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 3.1e-54 215.3 146 76.7
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 5.3e-54 214.5 146 76.7
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 5.3e-54 214.5 146 77.4
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 5.3e-54 214.5 146 78.1
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 6.9e-54 214.2 149 76.5
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 6.9e-54 214.2 146 76.0
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-53 213.4 147 78.9
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.5e-53 213.0 147 76.9
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 75.5
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 78.9
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 78.9
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 2.0e-53 212.6 145 77.9
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 2.6e-53 212.2 147 75.5
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 2.6e-53 212.2 147 75.5
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 2.6e-53 212.2 146 77.4
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 3.4e-53 211.8 137 81.0
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 5.8e-53 211.1 147 76.9
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 9.9e-53 210.3 149 74.5
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.7e-52 209.5 149 73.2
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.7e-52 209.5 150 75.3
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.7e-52 209.5 150 75.3
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.9e-52 208.8 147 75.5
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.9e-52 208.0 149 73.8
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 1.9e-51 206.1 149 74.5
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 7.1e-51 204.1 151 73.5
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 7.1e-51 204.1 146 74.0
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 2.1e-50 202.6 149 72.5
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 3.5e-50 201.8 147 71.4
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 3.5e-50 201.8 146 73.3
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 7.9e-50 200.7 146 72.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 1.8e-49 199.5 141 75.2
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.1e-48 196.8 150 72.7
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 4.3e-48 194.9 149 69.8
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 4.3e-48 194.9 147 66.0
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 7.4e-48 194.1 115 83.5
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 7.4e-48 194.1 154 70.1
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.3e-47 193.4 152 69.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.6e-47 193.0 147 70.7
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.6e-47 193.0 152 69.7
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 2.8e-47 192.2 155 68.4
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 4.8e-47 191.4 152 69.7
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 6.2e-47 191.0 150 69.3
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 8.2e-47 190.7 154 68.8
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 8.2e-47 190.7 157 66.9
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 8.2e-47 190.7 150 69.3
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 3.1e-46 188.7 153 66.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 5.3e-46 188.0 152 67.8
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 9.0e-46 187.2 153 67.3
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 7.6e-45 184.1 105 89.5
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.0e-44 183.7 146 68.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.2e-44 182.6 147 67.3
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.9e-44 181.4 146 67.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 6.5e-44 181.0 147 66.7
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.5e-44 181.0 146 68.5
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 5.1e-41 171.4 149 60.4
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 8.7e-41 170.6 109 80.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.3e-40 168.7 138 67.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.3e-40 168.7 138 67.4
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.3e-39 166.8 112 79.5
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.2e-39 166.0 149 63.8
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 8.2e-39 164.1 100 80.0
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.2e-37 160.2 161 55.9
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.9e-37 157.9 139 66.2
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.2e-36 156.0 150 59.3
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.1e-35 153.7 146 58.9
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 9.4e-35 150.6 149 59.1
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.2e-34 150.2 134 62.7
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 6.7e-33 144.4 133 59.4
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 4.1e-30 135.2 152 52.6
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.0e-29 132.9 92 73.9
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 2.0e-29 132.9 88 73.9
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 5.9e-29 131.3 92 72.8
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 6.5e-28 127.9 130 52.3
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 8.5e-28 127.5 125 55.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.1e-27 127.1 86 76.7
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 1.3e-23 113.6 166 46.4
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.5e-21 106.7 79 63.3
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.7e-20 103.2 92 58.7
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.4e-19 100.1 78 62.8
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.4e-19 100.1 79 60.8
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.6e-18 96.7 71 64.8
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.6e-18 96.7 71 64.8
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 6.1e-18 94.7 134 40.3
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 5.2e-17 91.7 148 41.2
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.0e-16 89.7 71 60.6
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 3.3e-16 89.0 69 56.5
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.3e-15 87.0 69 59.4
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.3e-15 87.0 69 60.9
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.7e-15 86.7 69 59.4
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 4.8e-15 85.1 144 41.7
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 3.5e-13 79.0 72 56.9
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.5e-13 79.0 72 55.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 2.7e-10 69.3 92 40.2
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 3.6e-10 68.9 94 43.6
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 6.1e-10 68.2 122 40.2
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 9.7e-08 60.8 72 40.3
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 1.7e-07 60.1 51 60.8
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.7e-07 60.1 72 40.3
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 3.1e-06 55.8 72 40.3


User provided reference genes

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