Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 4.4e-161 571.2 290 100.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 9.9e-137 490.3 290 85.9
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.9e-132 476.1 302 79.5
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 6.9e-130 467.6 302 78.5
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 9.0e-130 467.2 302 80.5
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.5e-129 466.5 302 78.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.4e-129 465.3 304 78.9
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 5.8e-129 464.5 302 78.8
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.3e-128 463.4 302 78.1
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.7e-128 463.0 287 82.9
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 3.8e-128 461.8 301 77.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.1e-127 460.3 287 85.0
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-127 459.9 303 78.2
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.9e-127 459.5 300 78.3
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.4e-127 459.1 299 77.9
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.2e-127 458.8 303 77.9
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 4.2e-127 458.4 294 80.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.4e-127 458.0 303 77.9
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.3e-127 457.2 300 77.7
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.1e-126 456.1 305 79.7
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.5e-126 455.3 302 76.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 4.6e-126 454.9 294 79.6
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.7e-125 453.0 303 77.9
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.9e-125 451.8 300 77.3
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 6.6e-125 451.1 302 75.8
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.1e-124 450.3 302 76.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.3e-123 446.8 312 74.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.6e-123 446.4 301 75.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.8e-123 445.7 302 74.8
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.6e-123 445.3 302 75.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 3.6e-123 445.3 302 75.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 4.8e-123 444.9 297 78.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.8e-123 444.9 295 78.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.4e-122 443.4 294 78.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 4.0e-122 441.8 298 76.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.9e-122 441.0 302 77.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.2e-121 440.3 300 75.7
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 5.8e-121 438.0 302 73.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.9e-121 437.2 297 78.8
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.9e-120 435.6 303 72.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.9e-120 435.6 288 77.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.9e-120 434.9 302 76.2
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 6.4e-120 434.5 300 75.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-119 433.7 303 74.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.4e-119 433.3 300 74.0
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.4e-119 432.6 288 78.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.4e-119 432.6 300 74.7
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.2e-119 431.8 302 76.2
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.5e-119 431.4 303 74.3
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 7.1e-119 431.0 302 74.8
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.0e-117 427.2 298 75.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.0e-117 427.2 294 76.2
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.8e-117 426.4 297 73.4
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.8e-117 426.4 297 73.4
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.1e-116 423.7 300 72.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.1e-116 423.7 299 75.6
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.5e-116 422.5 297 72.7
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-116 422.5 296 73.0
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.3e-116 422.2 293 75.8
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 3.3e-116 422.2 300 72.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 5.6e-116 421.4 319 69.6
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 5.6e-116 421.4 298 75.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 7.4e-116 421.0 300 73.3
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.4e-116 421.0 298 75.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.6e-115 419.9 290 77.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.8e-115 419.1 311 70.4
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 3.7e-115 418.7 301 72.8
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 4.8e-115 418.3 322 69.9
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.1e-115 417.5 300 72.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-114 417.2 290 75.5
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.1e-114 417.2 351 67.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.4e-114 416.8 300 71.3
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-113 413.7 300 70.3
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 4.5e-113 411.8 296 74.0
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 5.8e-113 411.4 269 77.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-112 409.8 302 71.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-112 409.8 300 70.3
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-112 409.5 300 69.7
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-112 409.5 300 70.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.8e-112 408.7 296 72.3
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 4.9e-112 408.3 295 71.5
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 4.9e-112 408.3 280 75.4
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.5e-111 406.0 299 71.2
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 3.2e-111 405.6 300 71.0
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 4.2e-111 405.2 300 70.3
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.5e-111 404.8 251 80.9
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.5e-111 404.8 302 71.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-110 403.7 274 75.5
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.2e-110 403.7 297 73.1
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.1e-110 402.9 260 77.7
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 4.6e-110 401.7 274 75.5
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.3e-109 399.4 300 70.3
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.9e-109 398.7 304 71.4
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 6.7e-109 397.9 300 70.0
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 6.7e-109 397.9 274 74.5
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 7.4e-108 394.4 301 69.4
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 9.6e-108 394.0 260 77.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-105 387.1 271 74.2
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-105 387.1 271 74.5
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 4.5e-105 385.2 260 78.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 7.6e-105 384.4 300 68.7
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 2.2e-104 382.9 266 73.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.2e-103 379.0 215 86.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.2e-103 378.6 308 66.2
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.1e-102 376.3 262 77.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.6e-102 375.6 314 65.0
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 8.2e-99 364.4 245 77.1
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.1e-98 362.5 298 67.1
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 4.1e-98 362.1 238 79.4
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 6.9e-98 361.3 246 77.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 9.0e-98 360.9 246 77.2
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.4e-97 359.0 300 64.3
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 3.4e-97 359.0 246 76.8
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 8.5e-96 354.4 279 68.1
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 2.5e-95 352.8 226 79.2
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 6.1e-94 348.2 218 81.7
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.0e-92 343.2 300 62.0
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 5.7e-92 341.7 225 76.9
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.4e-92 341.3 282 62.1
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 6.3e-91 338.2 280 66.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.6e-89 332.8 298 63.1
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.2e-86 323.9 215 80.5
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 5.2e-85 318.5 214 78.0
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-84 317.4 245 69.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.8e-83 312.8 219 76.3
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.7e-83 312.4 228 72.8
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-81 306.6 179 84.4
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.9e-81 305.1 179 83.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.1e-79 300.8 247 67.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.0e-77 294.3 215 71.6
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.0e-76 290.0 265 60.0
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 8.2e-75 284.6 300 52.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 3.1e-74 282.7 304 51.3
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 9.1e-74 281.2 313 49.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 3.8e-72 275.8 299 53.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.9e-71 273.5 222 63.5
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.8e-69 266.9 179 70.9
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 3.4e-68 262.7 177 71.2
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 9.1e-66 254.6 223 60.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.2e-65 254.2 192 71.9
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.7e-64 250.4 139 89.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.5e-63 245.4 163 75.5
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 3.0e-53 213.0 253 53.0
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.1e-50 204.5 247 43.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 4.3e-47 192.6 169 65.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.3e-45 186.8 149 65.8
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.4e-44 183.0 158 64.6
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.3e-40 171.0 120 77.5
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.4e-34 149.1 112 68.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.1e-30 135.2 82 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 6.4e-27 125.6 64 92.2
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.4e-26 124.4 90 70.0
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.5e-17 93.2 66 69.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-13 81.6 83 55.4
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.8e-13 80.9 103 46.6
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.9e-12 75.1 96 44.8
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-08 64.3 38 81.6
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-07 61.2 35 85.7
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 7.4e-07 58.9 111 40.5


User provided reference genes

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