Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 0.0e+00 1415.6 817 100.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 7.6e-161 572.0 788 49.1
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.4e-159 567.8 738 48.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.1e-149 532.7 739 46.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 7.9e-142 508.8 718 46.2
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 3.3e-140 503.4 691 46.2
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 2.1e-139 500.7 752 45.5
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.5e-137 493.0 721 45.5
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.5e-137 493.0 701 43.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 3.8e-136 490.0 715 44.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 8.5e-136 488.8 745 44.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.2e-135 486.9 711 43.7
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.3e-133 481.5 669 44.1
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.3e-132 476.5 671 45.8
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.6e-131 474.6 759 42.2
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 5.9e-129 466.1 628 49.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.3e-123 448.4 745 43.1
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.4e-119 434.9 807 39.2
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.6e-116 424.1 716 42.0
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.4e-114 418.3 653 44.0
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 4.1e-114 416.8 657 43.8
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.0e-113 414.5 657 43.7
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 5.9e-113 412.9 687 44.3
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.5e-111 407.5 735 42.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.0e-110 402.5 797 37.6
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.7e-108 395.6 698 38.7
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 9.7e-108 395.6 651 41.2
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.2e-107 392.5 665 42.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.4e-106 391.7 901 35.6
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 4.1e-106 390.2 728 40.9
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 2.0e-105 387.9 692 37.6
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 7.7e-105 386.0 715 41.3
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.7e-105 386.0 670 41.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.3e-104 385.2 662 40.2
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 6.1e-102 376.3 714 40.9
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.0e-101 374.0 670 38.1
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.0e-101 373.6 833 38.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.2e-100 372.1 809 37.2
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.2e-100 372.1 662 41.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.5e-100 371.7 712 38.6
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 9.8e-100 369.0 711 39.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.7e-99 368.2 715 38.5
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.7e-99 368.2 737 38.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.7e-99 368.2 710 40.0
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.7e-99 368.2 774 38.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.8e-99 366.7 725 40.1
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 6.3e-99 366.3 711 40.8
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 8.3e-99 365.9 716 38.8
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.4e-98 365.2 694 37.8
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 3.8e-96 357.1 739 38.3
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 4.2e-95 353.6 748 38.1
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.2e-95 353.6 644 39.0
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 5.5e-95 353.2 743 38.2
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.5e-95 353.2 708 39.5
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.1e-94 351.3 663 40.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.8e-93 348.2 698 36.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.8e-93 348.2 675 39.1
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.3e-93 347.8 703 38.5
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 6.8e-93 346.3 725 38.1
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.0e-92 344.7 753 38.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 7.5e-92 342.8 765 36.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 6.3e-91 339.7 695 38.0
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.2e-89 335.5 665 38.0
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.6e-89 335.1 746 37.8
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-89 334.7 711 38.3
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 7.8e-89 332.8 687 38.1
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.0e-88 332.4 702 36.2
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.3e-88 331.3 691 36.8
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.8e-88 330.5 709 34.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 8.6e-88 329.3 737 37.7
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.1e-87 328.9 680 36.6
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.5e-87 328.6 749 33.6
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-87 328.6 669 37.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.5e-87 328.6 671 35.6
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.6e-86 325.1 819 33.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.7e-86 323.6 669 37.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.3e-85 321.2 687 36.8
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 5.2e-85 320.1 704 37.2
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 6.8e-85 319.7 736 37.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 3.4e-84 317.4 664 36.3
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.4e-84 317.4 643 37.8
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 4.4e-84 317.0 664 36.3
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 7.5e-84 316.2 664 36.1
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.3e-83 315.5 693 35.4
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 2.9e-83 314.3 461 48.8
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.4e-83 313.2 722 33.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.8e-82 311.6 745 32.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 3.2e-82 310.8 656 35.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.2e-81 308.9 748 33.2
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 3.5e-81 307.4 761 35.0
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.3e-80 305.4 669 34.4
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.6e-80 303.1 668 34.4
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 6.6e-80 303.1 731 33.7
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.3e-79 300.4 710 34.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.8e-78 297.7 657 35.9
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 4.7e-78 297.0 693 35.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 8.9e-77 292.7 636 35.7
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 7.5e-76 289.7 722 35.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 9.8e-76 289.3 857 31.4
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.9e-75 287.7 755 33.9
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.9e-75 287.7 713 32.4
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 8.3e-75 286.2 764 33.1
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.6e-73 282.0 688 33.6
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.6e-73 280.4 666 37.5
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.3e-72 278.1 565 35.6
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.5e-71 275.4 746 35.0
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.2e-70 272.3 632 36.2
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 7.1e-66 256.5 920 26.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 6.0e-65 253.4 865 27.9
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.0e-57 226.9 568 36.3
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.0e-56 226.1 671 31.3
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.7e-56 225.3 685 28.2
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 6.6e-56 223.4 695 28.8
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 3.3e-55 221.1 670 30.1
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.8e-53 215.3 202 56.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 5.4e-50 203.8 192 60.4
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 8.7e-48 196.4 573 31.1
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 9.9e-44 183.0 635 26.5
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.9e-42 178.7 172 50.6
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.6e-41 174.1 232 43.5
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 8.7e-40 169.9 437 37.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.1e-37 162.9 342 40.1
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.3e-37 160.6 233 38.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.3e-35 156.0 246 40.7
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 5.5e-34 150.6 147 53.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.7e-30 137.9 189 42.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 4.8e-30 137.5 411 31.6
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 5.7e-23 114.0 149 41.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 3.7e-22 111.3 386 32.4
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 5.3e-21 107.5 115 48.7
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 5.9e-20 104.0 269 31.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.9e-19 101.7 199 32.7
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.6e-17 94.4 261 28.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 6.1e-17 94.0 758 22.0
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 6.1e-17 94.0 175 34.9
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 3.8e-11 74.7 495 26.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 5.5e-10 70.9 75 50.7
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.8e-08 65.9 90 38.9


User provided reference genes

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