Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30503 Striga asiatica HOM05D002559 ORTHO05D007687 4.0e-116 421.4 208 100.0
SGA_v2.0_scaffold13G06362 Striga asiatica HOM05D002559 ORTHO05D007687 1.3e-21 107.5 64 76.6
Migut.J01857 Erythranthe guttata HOM05D002559 ORTHO05D007687 1.7e-21 107.1 59 79.7
SGA_v2.0_scaffold72G24089 Striga asiatica HOM05D002559 ORTHO05D007687 4.9e-21 105.5 59 79.7
Oeu046718.1 Olea europaea HOM05D002559 ORTHO05D007687 2.4e-20 103.2 60 76.7
MSTRG.6495 Avicennia marina HOM05D002559 ORTHO05D007687 7.1e-20 101.7 60 71.7
Potri.006G195200 Populus trichocarpa HOM05D002559 ORTHO05D007687 1.0e-18 97.8 59 71.2
Sabra06G0149900 Salix brachista HOM05D002559 ORTHO05D007687 1.0e-18 97.8 59 72.9
Solyc09g065930.4 Solanum lycopersicum HOM05D002559 ORTHO05D007687 1.0e-18 97.8 60 73.3
Atru.chr8.1168 Acer truncatum HOM05D002559 ORTHO05D007687 1.3e-18 97.4 59 72.9
THA.LOC104820386 Tarenaya hassleriana HOM05D002559 ORTHO05D007687 1.7e-18 97.1 59 72.9
CDE06G1432 Ceratophyllum demersum HOM05D002559 ORTHO05D007687 2.3e-18 96.7 59 71.2
COL.COLO4_29373 Corchorus olitorius HOM05D002559 ORTHO05D007687 2.3e-18 96.7 60 71.7
Peaxi162Scf00003g04617 Petunia axillaris HOM05D002559 ORTHO05D007687 2.3e-18 96.7 59 72.9
Psat6g090120 Pisum sativum HOM05D002559 ORTHO05D007687 2.3e-18 96.7 60 71.7
Aqoxy7G00622 Aquilegia oxysepala HOM05D002559 ORTHO05D007687 3.9e-18 95.9 59 72.9
Eucgr.A02392 Eucalyptus grandis HOM05D002559 ORTHO05D007687 5.1e-18 95.5 62 67.7
Gorai.011G059800 Gossypium raimondii HOM05D002559 ORTHO05D007687 5.1e-18 95.5 60 71.7
Hma1.2p1_0124F.1_g058260 Hydrangea macrophylla HOM05D002559 ORTHO05D007687 5.1e-18 95.5 59 71.2
Glyma.09G107200 Glycine max HOM05D002559 ORTHO05D007687 6.6e-18 95.1 59 71.2
Nitab4.5_0000358g0040 Nicotiana tabacum HOM05D002559 ORTHO05D007687 6.6e-18 95.1 59 71.2
Nitab4.5_0000698g0050 Nicotiana tabacum HOM05D002559 ORTHO05D007687 6.6e-18 95.1 59 71.2
PGSC0003DMG400007534 Solanum tuberosum HOM05D002559 ORTHO05D007687 6.6e-18 95.1 59 71.2
Thecc.05G176500 Theobroma cacao HOM05D002559 ORTHO05D007687 6.6e-18 95.1 59 71.2
TPR.G27694 Trifolium pratense HOM05D002559 ORTHO05D007687 6.6e-18 95.1 60 68.3
Duzib093G2249 Durio zibethinus HOM05D002559 ORTHO05D007687 8.7e-18 94.7 59 72.9
MBI19_g17432_MAGBIO Magnolia biondii HOM05D002559 ORTHO05D007687 8.7e-18 94.7 62 64.5
arahy.Tifrunner.gnm1.ann1.75K7CQ Arachis hypogaea HOM05D002559 ORTHO05D007687 1.1e-17 94.4 59 72.9
arahy.Tifrunner.gnm1.ann1.90N86S Arachis hypogaea HOM05D002559 ORTHO05D007687 1.1e-17 94.4 59 72.9
Gohir.D10G056100 Gossypium hirsutum HOM05D002559 ORTHO05D007687 1.1e-17 94.4 59 71.2
Gorai.011G059300 Gossypium raimondii HOM05D002559 ORTHO05D007687 1.1e-17 94.4 60 70.0
Manes.08G041600 Manihot esculenta HOM05D002559 ORTHO05D007687 1.1e-17 94.4 59 69.5
CSS0017634 Camellia sinensis var. sinensis HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
Ciclev10012980m.g Citrus clementina HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
Duzib106G1845 Durio zibethinus HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
Glyma.02G170300 Glycine max HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
Nn7g35948 Nelumbo nucifera HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 69.5
PGR142G0770 Punica granatum HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 69.5
Sopen09g027720 Solanum pennellii HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
PGSC0003DMG400011423 Solanum tuberosum HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
PGSC0003DMG400024714 Solanum tuberosum HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 71.2
TWI77G0102 Tripterygium wilfordii HOM05D002559 ORTHO05D007687 1.5e-17 94.0 59 69.5
CANSAT64G2998 Cannabis sativa HOM05D002559 ORTHO05D007687 1.9e-17 93.6 59 71.2
DCAR_009691 Daucus carota HOM05D002559 ORTHO05D007687 1.9e-17 93.6 59 71.2
Gohir.A04G053100 Gossypium hirsutum HOM05D002559 ORTHO05D007687 1.9e-17 93.6 59 71.2
Gohir.D10G055600 Gossypium hirsutum HOM05D002559 ORTHO05D007687 1.9e-17 93.6 59 71.2
GSVIVG01033456001 Vitis vinifera HOM05D002559 ORTHO05D007687 1.9e-17 93.6 62 66.1
Manes.09G039000 Manihot esculenta HOM05D002559 ORTHO05D007687 2.5e-17 93.2 59 69.5
A04p31940 Brassica napus HOM05D002559 ORTHO05D007687 3.3e-17 92.8 59 71.2
Ca_12016_v3 Cicer arietinum L. HOM05D002559 ORTHO05D007687 3.3e-17 92.8 59 69.5
EL10Ac3g06871 Beta vulgaris HOM05D002559 ORTHO05D007687 4.3e-17 92.4 60 73.3
BcaB06g29220 Brassica carinata HOM05D002559 ORTHO05D007687 4.3e-17 92.4 59 69.5
Medtr1g054455 Medicago truncatula HOM05D002559 ORTHO05D007687 4.3e-17 92.4 60 68.3
Solyc01g099730.3 Solanum lycopersicum HOM05D002559 ORTHO05D007687 4.3e-17 92.4 59 69.5
Sopen01g043250 Solanum pennellii HOM05D002559 ORTHO05D007687 4.3e-17 92.4 59 69.5
THA.LOC104824485 Tarenaya hassleriana HOM05D002559 ORTHO05D007687 4.3e-17 92.4 63 66.7
vmacro07884 Vaccinium macrocarpon HOM05D002559 ORTHO05D007687 4.3e-17 92.4 59 69.5
Aa31LG1G24190 Aethionema arabicum HOM05D002559 ORTHO05D007687 5.6e-17 92.0 59 71.2
C04p69410 Brassica napus HOM05D002559 ORTHO05D007687 5.6e-17 92.0 60 70.0
FvH4_6g21750 Fragaria vesca HOM05D002559 ORTHO05D007687 5.6e-17 92.0 59 69.5
FAN02G0508 Fragaria x ananassa HOM05D002559 ORTHO05D007687 5.6e-17 92.0 59 69.5
FAN14G3509 Fragaria x ananassa HOM05D002559 ORTHO05D007687 5.6e-17 92.0 59 69.5
Lalb_Chr21g0316101 Lupinus albus HOM05D002559 ORTHO05D007687 5.6e-17 92.0 59 69.5
RcHm_v2.0_Chr3g0479091 Rosa chinensis HOM05D002559 ORTHO05D007687 5.6e-17 92.0 59 69.5
Sp4g24210 Schrenkiella parvula HOM05D002559 ORTHO05D007687 7.3e-17 91.7 59 69.5
Actinidia32412 Actinidia chinensis HOM05D002559 ORTHO05D007687 9.6e-17 91.3 71 59.2
ATR0598G195 Amborella trichopoda HOM05D002559 ORTHO05D007687 9.6e-17 91.3 59 67.8
FAN05G1828 Fragaria x ananassa HOM05D002559 ORTHO05D007687 9.6e-17 91.3 91 51.6
Peaxi162Scf00363g00821 Petunia axillaris HOM05D002559 ORTHO05D007687 9.6e-17 91.3 60 66.7
TAR633G0789 Trochodendron aralioides HOM05D002559 ORTHO05D007687 9.6e-17 91.3 59 67.8
Lj5g0004649 Lotus japonicus HOM05D002559 ORTHO05D007687 1.3e-16 90.9 59 69.5
C03p28020 Brassica napus HOM05D002559 ORTHO05D007687 1.6e-16 90.5 62 66.1
Thhalv10017359m.g Eutrema salsugineum HOM05D002559 ORTHO05D007687 1.6e-16 90.5 59 67.8
Gorai.009G391600 Gossypium raimondii HOM05D002559 ORTHO05D007687 1.6e-16 90.5 60 68.3
MD11G1239000 Malus domestica HOM05D002559 ORTHO05D007687 1.6e-16 90.5 59 67.8
Phvul.007G261600 Phaseolus vulgaris HOM05D002559 ORTHO05D007687 1.6e-16 90.5 59 69.5
CARHR137050 Cardamine hirsuta HOM05D002559 ORTHO05D007687 2.1e-16 90.1 59 67.8
ECA238G4539 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-16 90.1 59 66.1
Carub.0004s2427 Capsella rubella HOM05D002559 ORTHO05D007687 2.8e-16 89.7 59 67.8
MD03G1221500 Malus domestica HOM05D002559 ORTHO05D007687 2.8e-16 89.7 59 67.8
Cfa020135 Carpinus fangiana HOM05D002559 ORTHO05D007687 3.6e-16 89.4 62 66.1
Haze_20033 Corylus avellana HOM05D002559 ORTHO05D007687 3.6e-16 89.4 62 66.1
Gohir.D04G090700 Gossypium hirsutum HOM05D002559 ORTHO05D007687 3.6e-16 89.4 58 69.0
Prupe.7G082900 Prunus persica HOM05D002559 ORTHO05D007687 3.6e-16 89.4 59 67.8
QL07p024783 Quercus lobata HOM05D002559 ORTHO05D007687 3.6e-16 89.4 60 68.3
VMungo0720G2494 Vigna mungo HOM05D002559 ORTHO05D007687 3.6e-16 89.4 59 69.5
CiPaw.10G024700 Carya illinoinensis HOM05D002559 ORTHO05D007687 4.8e-16 89.0 59 67.8
HanXRQChr14g0438201 Helianthus annuus HOM05D002559 ORTHO05D007687 4.8e-16 89.0 59 67.8
AL4G40300 Arabidopsis lyrata HOM05D002559 ORTHO05D007687 6.2e-16 88.6 59 66.1
AT2G41945 Arabidopsis thaliana HOM05D002559 ORTHO05D007687 6.2e-16 88.6 59 66.1
Dinv24051 Davidia involucrata HOM05D002559 ORTHO05D007687 6.2e-16 88.6 60 68.3
BcaC02g07270 Brassica carinata HOM05D002559 ORTHO05D007687 8.1e-16 88.2 59 67.8
Hund24818 Selenicereus undatus HOM05D002559 ORTHO05D007687 8.1e-16 88.2 60 68.3
BcaB01g03428 Brassica carinata HOM05D002559 ORTHO05D007687 1.1e-15 87.8 59 66.1
BcaC01g05317 Brassica carinata HOM05D002559 ORTHO05D007687 1.1e-15 87.8 59 66.1
BraA04t18652Z Brassica rapa HOM05D002559 ORTHO05D007687 1.1e-15 87.8 59 67.8
ClCG10G017720 Citrullus lanatus HOM05D002559 ORTHO05D007687 1.4e-15 87.4 59 66.1
MELO3C009602.2 Cucumis melo HOM05D002559 ORTHO05D007687 1.4e-15 87.4 59 64.4
unitig_0.g526 Utricularia gibba HOM05D002559 ORTHO05D007687 1.4e-15 87.4 59 67.8
BolC3t15172H Brassica oleracea HOM05D002559 ORTHO05D007687 1.8e-15 87.0 59 66.1
Lsat_1_v5_gn_2_56540 Lactuca sativa HOM05D002559 ORTHO05D007687 1.8e-15 87.0 59 66.1
A03p23490 Brassica napus HOM05D002559 ORTHO05D007687 2.4e-15 86.7 59 64.4
BraA03t11565Z Brassica rapa HOM05D002559 ORTHO05D007687 2.4e-15 86.7 59 64.4
Sed0011167 Sechium edule HOM05D002559 ORTHO05D007687 4.0e-15 85.9 59 64.4
BolC4t28443H Brassica oleracea HOM05D002559 ORTHO05D007687 5.3e-15 85.5 59 66.1
Zm00001eb278760 Zea mays HOM05D002559 ORTHO05D007687 9.0e-15 84.7 60 65.0
CSS0028542 Camellia sinensis var. sinensis HOM05D002559 ORTHO05D007687 1.2e-14 84.3 79 55.7
Sc19g0006130 Simmondsia chinensis HOM05D002559 ORTHO05D007687 1.2e-14 84.3 62 66.1
Os06g0206200 Oryza sativa ssp. japonica HOM05D002559 ORTHO05D007687 4.5e-14 82.4 61 65.6
AUR62015325 Chenopodium quinoa HOM05D002559 ORTHO05D007687 5.8e-14 82.0 60 65.0
AUR62012012 Chenopodium quinoa HOM05D002559 ORTHO05D007687 7.6e-14 81.6 60 65.0
Cc06_g15580 Coffea canephora HOM05D002559 ORTHO05D007687 4.9e-13 79.0 60 61.7
DCAR_019859 Daucus carota HOM05D002559 ORTHO05D007687 1.4e-12 77.4 87 46.0
HPP92_003743 Vanilla planifolia HOM05D002559 ORTHO05D007687 1.4e-12 77.4 59 59.3
CsaV3_3G038570 Cucumis sativus L. HOM05D002559 ORTHO05D007687 1.9e-12 77.0 82 48.8
PSO170G0150 Papaver somniferum HOM05D002559 ORTHO05D007687 3.2e-12 76.3 59 61.0
PSO528G0113 Papaver somniferum HOM05D002559 ORTHO05D007687 3.2e-12 76.3 59 61.0
TWI53G0051 Tripterygium wilfordii HOM05D002559 ORTHO05D007687 6.0e-11 72.0 53 62.3
CiPaw.09G027600 Carya illinoinensis HOM05D002559 ORTHO05D007687 1.0e-10 71.2 69 55.1
Rhsim03G0003900 Rhododendron simsii HOM05D002559 ORTHO05D007687 1.0e-10 71.2 40 75.0
RcHm_v2.0_Chr7g0223201 Rosa chinensis HOM05D002559 ORTHO05D007687 9.6e-09 64.7 59 54.2
Lsat_1_v5_gn_6_36260 Lactuca sativa HOM05D002559 ORTHO05D007687 1.3e-08 64.3 38 73.7
Haze_12535 Corylus avellana HOM05D000557 ORTHO05D002315 4.5e-06 55.8 79 38.0


User provided reference genes

Program Settings