Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 4.0e-287 990.7 499 100.0
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 6.4e-83 312.4 320 58.4
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.7e-51 208.0 232 54.7
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.2e-50 203.8 232 55.2
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 6.4e-43 179.5 286 47.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.3e-40 171.0 254 45.3
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.9e-40 170.2 234 50.9
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.5e-36 158.3 238 46.2
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.4e-35 152.9 233 47.6
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.4e-34 151.0 241 45.2
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.6e-33 146.7 211 49.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.6e-33 146.7 230 47.8
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.0e-33 146.4 232 45.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.6e-31 139.8 223 45.3
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.4e-31 139.4 230 43.9
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 9.6e-31 139.0 263 40.3
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.0e-29 133.7 251 41.0
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 9.0e-29 132.5 218 44.0
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.0e-29 132.5 209 47.4
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.0e-29 132.5 236 44.9
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.4e-28 130.6 249 41.4
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.8e-28 129.8 223 45.3
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 5.8e-28 129.8 223 43.9
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.3e-27 128.6 268 41.0
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.7e-27 128.3 237 43.5
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.8e-27 127.1 206 46.1
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 8.4e-27 125.9 235 45.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 8.4e-27 125.9 228 43.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.5e-26 124.4 158 50.6
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.5e-26 124.4 195 46.7
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.2e-26 124.0 203 45.3
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.2e-26 123.6 201 47.3
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 7.1e-26 122.9 230 42.6
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 9.3e-26 122.5 203 43.8
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.2e-25 122.1 210 44.8
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.2e-25 122.1 202 45.0
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 4.6e-25 120.2 211 44.5
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 4.6e-25 120.2 203 44.8
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 6.0e-25 119.8 226 41.6
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.0e-24 119.0 204 43.6
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.8e-24 118.2 166 47.0
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.1e-23 115.5 230 40.4
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-23 115.5 205 42.0
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.1e-23 115.5 201 43.3
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.5e-23 114.4 236 43.2
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.5e-23 114.4 220 42.3
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 4.3e-23 113.6 206 38.8
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.6e-22 111.7 233 40.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.1e-22 111.3 223 38.6
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.2e-22 109.4 189 42.3
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.1e-21 109.0 180 43.9
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.4e-21 108.6 189 39.7
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.4e-21 107.8 221 39.8
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.2e-20 105.5 219 39.3
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.0e-19 102.4 236 36.9
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.3e-19 102.1 127 49.6
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.7e-19 101.7 128 52.3
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.7e-19 101.7 192 41.1
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.2e-19 101.3 214 40.7
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.9e-19 100.9 196 42.3
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 2.9e-19 100.9 231 36.8
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.9e-19 100.9 127 48.8
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 3.8e-19 100.5 203 38.9
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 3.8e-19 100.5 126 50.8
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.1e-18 99.0 176 41.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.4e-18 98.6 127 48.0
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.4e-18 98.6 254 37.4
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.9e-18 98.2 200 39.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.9e-18 98.2 198 39.4
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.5e-18 97.8 228 38.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.2e-18 97.1 125 50.4
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 5.5e-18 96.7 217 38.2
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.2e-17 95.5 196 41.3
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 2.1e-17 94.7 241 35.7
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 4.6e-17 93.6 126 50.0
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 4.6e-17 93.6 126 50.0
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 4.6e-17 93.6 184 42.4
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 4.6e-17 93.6 184 41.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.1e-17 93.2 117 47.9
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 6.1e-17 93.2 128 46.9
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 6.1e-17 93.2 128 46.9
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 6.1e-17 93.2 128 46.9
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 6.1e-17 93.2 165 43.6
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 6.1e-17 93.2 165 43.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 6.1e-17 93.2 193 41.5
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 7.9e-17 92.8 125 48.0
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.0e-16 92.4 127 51.2
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.8e-16 91.7 235 33.6
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.8e-16 91.7 128 48.4
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 2.3e-16 91.3 209 38.3
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.0e-16 90.9 128 46.9
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.9e-16 90.5 173 41.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.9e-16 90.5 173 41.0
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.1e-16 90.1 129 48.1
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 6.7e-16 89.7 127 48.8
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 8.7e-16 89.4 190 40.0
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 8.7e-16 89.4 127 48.8
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.5e-15 88.6 129 48.1
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.5e-15 88.6 245 37.6
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.5e-15 87.8 236 33.5
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.5e-15 87.8 129 45.0
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 9.7e-15 85.9 214 35.5
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 9.7e-15 85.9 127 47.2
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 9.7e-15 85.9 175 43.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-14 85.5 231 34.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-14 85.5 231 34.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.6e-14 85.1 218 35.8
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-14 85.1 232 34.5
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-14 84.3 196 37.2
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-14 84.3 196 37.2
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.1e-13 82.4 127 48.0
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.4e-13 82.0 131 45.0
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.4e-13 82.0 208 35.1
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.8e-13 81.6 126 49.2
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-13 81.6 129 42.6
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.8e-13 81.6 206 35.0
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.8e-13 81.6 198 35.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.8e-13 81.6 198 35.9
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.8e-13 81.6 127 43.3
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.8e-13 81.6 128 44.5
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.4e-13 81.3 206 38.3
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-13 81.3 126 43.7
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-13 80.5 198 35.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-13 80.5 198 35.4
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 5.3e-13 80.1 182 37.4
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.9e-13 79.7 199 35.2
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.0e-13 79.3 205 35.1
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.5e-12 78.6 199 36.2
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-12 78.6 126 42.1
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.5e-12 78.6 194 36.6
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.5e-12 78.6 126 40.5
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.6e-12 77.8 158 40.5
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 2.6e-12 77.8 198 37.4
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 3.4e-12 77.4 130 43.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.4e-12 77.4 213 35.7
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 4.5e-12 77.0 199 36.2
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.5e-12 77.0 127 40.9
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 5.9e-12 76.6 181 38.1
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 7.7e-12 76.3 158 40.5
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.0e-11 75.9 129 40.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.0e-11 75.9 202 34.7
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-11 75.9 182 39.0
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.2e-11 74.7 240 31.7
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.9e-11 74.3 130 41.5
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.9e-11 74.3 86 53.5
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 3.8e-11 73.9 199 31.7
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.1e-10 72.4 130 41.5
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.4e-10 72.0 125 39.2
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.4e-10 72.0 76 55.3
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 3.2e-10 70.9 177 32.2
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.2e-10 70.5 204 33.3
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 5.5e-10 70.1 253 29.2
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 9.4e-10 69.3 89 44.9
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.2e-09 68.9 119 40.3
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.8e-08 65.1 126 36.5
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.0e-08 64.3 130 42.3
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 3.9e-08 63.9 76 48.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.1e-08 63.5 127 37.8
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.1e-07 62.4 126 36.5
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.7e-06 58.5 242 27.7
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.7e-06 58.5 79 49.4
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.8e-06 57.8 125 40.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.8e-06 57.8 106 35.8
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 2.8e-06 57.8 125 33.6
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 4.8e-06 57.0 85 45.9
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 6.3e-06 56.6 49 63.3


User provided reference genes

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