Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 5.5e-62 240.7 116 100.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 4.2e-54 214.5 116 90.5
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 6.1e-53 210.7 117 87.2
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 5.7e-51 204.1 118 83.1
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 9.7e-51 203.4 116 82.8
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.4e-49 198.7 110 83.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 5.9e-48 194.1 111 82.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.8e-47 191.4 111 81.1
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.5e-47 190.3 103 84.5
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.5e-47 190.3 103 84.5
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 9.4e-46 186.8 111 77.5
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 9.4e-46 186.8 109 79.8
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.2e-45 186.4 116 77.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.1e-45 185.7 111 76.6
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.7e-45 185.3 101 83.2
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.6e-45 184.5 110 78.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 6.1e-45 184.1 102 83.3
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 6.1e-45 184.1 105 81.0
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.8e-44 182.6 109 78.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.1e-43 179.9 110 79.1
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.1e-43 179.9 107 78.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.5e-43 179.5 111 77.5
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.0e-43 179.1 111 76.6
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.5e-43 178.7 96 84.4
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.5e-43 178.7 102 80.4
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.3e-43 178.3 109 75.2
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.3e-43 177.9 102 80.4
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 4.3e-43 177.9 111 76.6
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 4.3e-43 177.9 111 76.6
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 7.4e-43 177.2 118 75.4
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 7.4e-43 177.2 102 80.4
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 9.7e-43 176.8 96 84.4
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.3e-42 176.4 109 73.4
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.7e-42 176.0 105 77.1
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 111 73.9
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.2e-42 175.6 111 74.8
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.8e-42 175.3 106 77.4
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.8e-42 175.3 96 83.3
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 3.7e-42 174.9 96 83.3
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.8e-42 174.5 103 79.6
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 4.8e-42 174.5 106 78.3
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.3e-42 174.1 104 80.8
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 6.3e-42 174.1 109 76.1
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.3e-42 174.1 112 75.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 8.2e-42 173.7 94 84.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 8.2e-42 173.7 115 75.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 8.2e-42 173.7 89 86.5
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.1e-41 173.3 107 76.6
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.1e-41 173.3 107 76.6
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.4e-41 172.9 94 84.0
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.8e-41 172.6 94 84.0
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.8e-41 172.6 101 76.2
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.4e-41 172.2 110 73.6
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 2.4e-41 172.2 94 85.1
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 2.4e-41 172.2 118 76.3
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 2.4e-41 172.2 105 78.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.1e-41 171.8 104 79.8
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 3.1e-41 171.8 121 70.2
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.1e-41 171.4 111 74.8
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.3e-41 171.0 115 72.2
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 5.3e-41 171.0 96 81.2
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 6.9e-41 170.6 107 75.7
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 6.9e-41 170.6 98 82.7
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 9.1e-41 170.2 98 81.6
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 9.1e-41 170.2 112 72.3
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.1e-41 170.2 112 75.9
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.1e-41 170.2 112 75.9
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.5e-40 169.5 98 82.7
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.0e-40 169.1 104 76.9
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.6e-40 168.7 109 72.5
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.4e-40 168.3 110 73.6
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.4e-40 168.3 102 78.4
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.9e-40 167.5 115 70.4
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.7e-40 167.2 111 73.0
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.0e-39 166.8 115 68.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.3e-39 166.4 109 75.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.7e-39 166.0 111 74.8
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.2e-39 165.6 110 72.7
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.2e-39 165.6 99 73.7
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.9e-39 165.2 107 74.8
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.8e-39 164.9 112 71.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 3.8e-39 164.9 114 67.5
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.8e-39 164.9 112 75.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.8e-39 164.9 109 73.4
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 5.0e-39 164.5 112 71.4
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.5e-39 164.1 115 72.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.1e-38 163.3 107 73.8
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.4e-38 162.9 119 67.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 69.0
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 69.0
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 69.0
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 69.0
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.9e-38 162.5 107 72.0
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.5e-38 162.2 109 70.6
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 7.2e-38 160.6 107 72.0
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 7.2e-38 160.6 107 72.9
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 7.2e-38 160.6 107 72.9
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 9.4e-38 160.2 107 72.9
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 9.4e-38 160.2 107 72.0
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-37 159.8 98 77.6
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.2e-37 159.8 98 77.6
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 116 68.1
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-37 159.1 107 72.9
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 2.1e-37 159.1 98 76.5
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.1e-37 159.1 94 76.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 2.7e-37 158.7 101 74.3
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.7e-37 158.7 107 72.9
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.7e-37 158.7 107 71.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.7e-37 158.7 97 74.2
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 4.7e-37 157.9 98 75.5
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 4.7e-37 157.9 107 71.0
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 4.7e-37 157.9 84 81.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-37 157.5 104 72.1
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 6.1e-37 157.5 108 69.4
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 7.9e-37 157.1 107 71.0
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 7.9e-37 157.1 107 71.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 7.9e-37 157.1 99 73.7
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.4e-36 156.4 107 71.0
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.4e-36 156.4 101 73.3
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.3e-36 155.6 81 81.5
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.3e-36 155.6 81 81.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.3e-36 155.6 81 81.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.3e-36 155.6 98 75.5
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 3.0e-36 155.2 120 66.7
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 3.0e-36 155.2 120 66.7
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 3.9e-36 154.8 104 70.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.7e-36 154.1 101 73.3
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.3e-35 151.8 101 69.3
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.7e-35 151.0 109 68.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 5.7e-35 151.0 111 64.9
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 5.7e-35 151.0 111 64.9
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 9.7e-35 150.2 76 86.8
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.3e-34 149.8 92 73.9
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 3.7e-34 148.3 105 69.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 3.7e-34 148.3 101 70.3
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.8e-34 147.9 92 75.0
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 9.1e-33 143.7 107 65.4
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.5e-31 137.5 112 65.2
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 4.2e-30 134.8 81 74.1
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 5.5e-30 134.4 106 61.3
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.1e-29 131.0 106 60.4
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 4.1e-25 118.2 80 71.2
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 4.5e-24 114.8 89 59.6
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 3.2e-22 108.6 72 72.2
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 8.0e-21 104.0 109 51.4
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.8e-20 100.5 79 59.5
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.5e-19 99.8 96 54.2
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-18 96.3 61 75.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 2.2e-18 95.9 113 47.8
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.8e-18 95.5 69 58.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.7e-18 95.1 61 68.9
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.5e-14 82.4 73 49.3
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 9.4e-14 80.5 58 69.0
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.6e-13 79.7 57 64.9
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 7.5e-11 70.9 95 42.1
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 7.7e-08 60.8 42 69.0
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 3.3e-06 55.5 58 48.3


User provided reference genes

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