Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 2.5e-50 201.8 102 100.0
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 6.3e-46 187.2 102 94.1
SGA_v2.0_scaffold46G17378 Striga asiatica HOM05D007326 ORTHO05D009048 6.1e-33 144.1 95 82.1
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 1.8e-24 115.9 108 63.9
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 1.0e-19 100.1 108 56.5
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 3.3e-18 95.1 110 51.8
Migut.F01037 Erythranthe guttata HOM05D007326 ORTHO05D009048 3.7e-14 81.6 98 54.1
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 2.4e-13 79.0 88 51.1
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 4.1e-13 78.2 88 46.6
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 9.2e-13 77.0 80 53.8
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 2.7e-12 75.5 84 47.6
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 4.6e-12 74.7 73 53.4
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.8e-12 73.9 87 47.1
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 1.0e-11 73.6 101 45.5
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.0e-11 73.6 91 47.3
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 1.0e-11 73.6 92 44.6
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 1.7e-11 72.8 87 50.6
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 2.3e-11 72.4 39 79.5
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.0e-11 72.0 97 50.5
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 3.0e-11 72.0 123 41.5
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.9e-11 71.6 95 50.5
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 3.9e-11 71.6 95 50.5
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 5.0e-11 71.2 89 49.4
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 5.0e-11 71.2 66 50.0
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 6.6e-11 70.9 93 46.2
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 8.6e-11 70.5 58 60.3
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 8.6e-11 70.5 118 40.7
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 1.1e-10 70.1 85 51.8
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 1.1e-10 70.1 89 47.2
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 2.5e-10 68.9 37 81.1
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 4.3e-10 68.2 93 40.9
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 4.3e-10 68.2 88 45.5
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 4.3e-10 68.2 85 47.1
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 4.3e-10 68.2 86 48.8
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.6e-10 67.8 65 55.4
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 5.6e-10 67.8 34 82.4
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 5.6e-10 67.8 92 45.7
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 5.6e-10 67.8 39 79.5
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 7.3e-10 67.4 38 76.3
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 7.3e-10 67.4 105 41.0
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 9.5e-10 67.0 34 82.4
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 9.5e-10 67.0 34 82.4
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 9.5e-10 67.0 84 45.2
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 1.2e-09 66.6 89 44.9
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.2e-09 66.6 36 80.6
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 1.2e-09 66.6 32 84.4
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.2e-09 66.6 89 47.2
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 1.2e-09 66.6 84 46.4
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 1.6e-09 66.2 32 84.4
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 1.6e-09 66.2 53 64.2
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 2.1e-09 65.9 32 81.2
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 2.1e-09 65.9 37 75.7
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 2.1e-09 65.9 36 80.6
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 2.8e-09 65.5 34 79.4
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 2.8e-09 65.5 34 79.4
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 2.8e-09 65.5 91 45.1
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 2.8e-09 65.5 34 79.4
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 2.8e-09 65.5 34 79.4
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 3.6e-09 65.1 34 79.4
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 3.6e-09 65.1 34 79.4
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 3.6e-09 65.1 34 79.4
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 3.6e-09 65.1 34 79.4
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 3.6e-09 65.1 85 45.9
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 3.6e-09 65.1 34 79.4
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 4.7e-09 64.7 58 56.9
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 6.2e-09 64.3 32 81.2
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 6.2e-09 64.3 69 53.6
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.2e-09 64.3 36 77.8
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 8.0e-09 63.9 93 44.1
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 8.0e-09 63.9 86 47.7
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 1.1e-08 63.5 103 43.7
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.1e-08 63.5 39 76.9
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.4e-08 63.2 86 43.0
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 1.4e-08 63.2 70 48.6
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 1.4e-08 63.2 30 83.3
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 1.4e-08 63.2 60 56.7
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 1.8e-08 62.8 64 50.0
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 1.8e-08 62.8 53 60.4
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 1.8e-08 62.8 44 68.2
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 2.3e-08 62.4 90 40.0
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 2.3e-08 62.4 100 42.0
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 3.1e-08 62.0 41 68.3
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.2e-08 61.2 65 52.3
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 5.2e-08 61.2 91 42.9
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 6.8e-08 60.8 106 43.4
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 8.9e-08 60.5 65 52.3
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 8.9e-08 60.5 66 47.0
Cre02.g073800 Chlamydomonas reinhardtii HOM05D007326 ORTHO05D009048 1.2e-07 60.1 41 63.4
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 1.5e-07 59.7 109 40.4
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 2.6e-07 58.9 88 43.2
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 2.6e-07 58.9 120 42.5
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 3.4e-07 58.5 100 43.0
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 4.4e-07 58.2 47 57.4
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 4.4e-07 58.2 105 42.9
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 5.8e-07 57.8 89 41.6
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 9.8e-07 57.0 112 39.3
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 1.3e-06 56.6 43 65.1
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 2.9e-06 55.5 88 42.0
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 6.4e-06 54.3 122 34.4


User provided reference genes

Program Settings