Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2739.9 1381 100.0
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1384 91.6
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2529.2 1384 91.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1384 90.8
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2526.5 1399 90.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1384 90.8
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2510.3 1384 90.1
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2505.3 1384 90.0
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1384 89.1
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1384 90.0
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1384 90.3
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2501.1 1385 89.6
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2500.7 1384 89.7
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1386 89.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1384 89.7
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2493.0 1384 89.8
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2491.8 1386 89.3
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2491.5 1384 90.0
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2490.7 1384 89.5
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2490.7 1384 89.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2490.3 1384 88.9
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2490.3 1385 89.7
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2489.9 1384 90.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1384 89.9
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1386 89.0
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2487.2 1388 89.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2486.4 1384 90.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2484.5 1388 89.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1384 89.6
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1381 88.8
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1386 88.6
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1384 89.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1386 89.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2476.4 1384 88.7
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1384 89.0
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1384 88.7
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1384 88.7
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1385 89.0
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2473.4 1385 89.0
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2473.0 1386 88.9
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1383 88.9
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1385 89.0
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2468.7 1384 87.9
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2467.6 1384 88.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2467.6 1399 88.0
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1384 89.0
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2462.2 1382 87.8
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2461.8 1384 88.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2461.8 1384 88.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2461.4 1384 88.4
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2460.6 1384 88.3
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2459.5 1386 87.4
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2458.7 1385 87.9
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2451.0 1384 87.9
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1382 87.3
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1384 87.0
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2447.2 1384 87.9
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2445.2 1384 87.0
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2442.9 1384 87.6
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1385 87.0
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2433.7 1385 87.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2433.7 1384 88.6
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2433.3 1384 87.0
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.3
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.1
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2431.4 1446 83.7
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2429.8 1384 87.3
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2428.3 1384 87.1
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2428.3 1384 87.1
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2426.4 1385 88.1
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2422.1 1395 86.3
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2421.4 1384 87.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1355 88.5
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2420.2 1335 89.0
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2416.7 1384 86.4
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1411 85.5
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2415.2 1385 87.5
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2415.2 1384 86.4
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2412.1 1382 86.1
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2407.9 1384 86.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1382 85.6
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1383 86.0
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2401.7 1382 85.5
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2394.8 1383 85.6
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1383 85.5
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1383 85.5
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1384 84.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1384 84.9
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2389.4 1384 86.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2389.0 1384 85.5
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2389.0 1384 85.5
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2362.4 1358 86.7
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2351.2 1409 84.6
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2341.6 1387 84.4
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2340.1 1341 85.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2337.8 1382 84.2
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2324.3 1384 83.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2280.4 1332 83.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2253.4 1259 89.4
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2248.0 1260 88.7
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2241.1 1263 88.6
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2192.9 1333 80.6
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2182.1 1347 81.5
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2176.4 1334 78.9
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2171.4 1331 78.4
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2158.6 1331 78.7
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2158.6 1331 78.7
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2157.1 1357 77.2
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2007.3 1382 76.8
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1993.0 1121 88.5
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1964.9 1109 88.1
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1878.6 1333 69.5
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1878.6 1402 72.3
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1865.5 1334 68.4
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1704.1 913 92.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1677.9 914 89.7
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1627.1 898 89.6
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1499.6 808 91.0
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1490.3 809 90.1
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1161.4 690 84.5
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1104.0 676 81.4
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 4.2e-302 1042.0 670 79.3
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.8e-298 1029.2 571 87.7
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.6e-269 932.6 1199 44.8
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.2e-259 901.0 592 76.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 7.3e-230 802.0 472 85.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 7.1e-225 785.4 472 83.7
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.1e-220 770.0 472 82.2
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.6e-216 757.7 472 82.2
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.0e-202 711.8 398 86.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 7.9e-176 622.5 1375 32.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 5.2e-159 566.6 1474 30.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.4e-110 404.1 1284 28.0
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 3.9e-90 337.8 175 94.9
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.4e-66 259.6 150 82.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 5.5e-60 237.7 123 92.7
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.8e-48 198.7 107 92.5
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 3.6e-43 181.8 179 58.1
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 5.9e-30 137.9 139 50.4
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.3e-28 132.1 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.0e-26 125.2 91 70.3
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.9e-20 106.3 61 85.2


User provided reference genes

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