Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 6.2e-70 267.3 132 100.0
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 1.2e-68 263.1 132 98.5
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 3.1e-29 132.1 134 59.7
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 6.3e-14 81.3 122 44.3
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 4.2e-10 68.6 111 44.1
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 5.5e-10 68.2 107 44.9
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.2e-09 67.0 152 37.5
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.2e-09 67.0 40 77.5
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.6e-09 66.6 135 37.8
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.6e-09 65.5 56 60.7
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 4.7e-09 65.1 100 43.0
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 6.1e-09 64.7 50 66.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.8e-08 63.2 57 57.9
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.8e-08 63.2 57 57.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-08 62.8 58 60.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.0e-08 62.4 48 66.7
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.0e-08 62.4 60 60.0
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.0e-08 62.4 128 39.8
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 5.2e-08 61.6 44 65.9
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.2e-08 61.6 52 65.4
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 5.2e-08 61.6 50 64.0
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.7e-08 61.2 57 56.1
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 8.8e-08 60.8 62 48.4
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.8e-08 60.8 62 48.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.2e-07 60.5 56 58.9
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.2e-07 60.5 81 46.9
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.5e-07 60.1 59 54.2
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.5e-07 60.1 57 56.1
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.5e-07 60.1 137 36.5
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.5e-07 60.1 127 37.0
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.0e-07 59.7 44 63.6
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.0e-07 59.7 69 47.8
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 2.0e-07 59.7 60 50.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.6e-07 59.3 62 50.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 2.6e-07 59.3 55 52.7
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 2.6e-07 59.3 138 34.1
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 3.3e-07 58.9 51 56.9
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 3.3e-07 58.9 86 43.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.4e-07 58.5 51 58.8
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.4e-07 58.5 77 46.8
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.4e-07 58.5 60 50.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 5.7e-07 58.2 60 55.0
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 5.7e-07 58.2 90 45.6
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.7e-07 58.2 81 44.4
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 5.7e-07 58.2 60 53.3
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 5.7e-07 58.2 75 46.7
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 5.7e-07 58.2 46 65.2
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.5e-07 57.8 58 55.2
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 7.5e-07 57.8 54 57.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 7.5e-07 57.8 48 60.4
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 9.7e-07 57.4 57 54.4
Migut.K00136 Erythranthe guttata HOM05D002974 ORTHO05D002992 9.7e-07 57.4 43 62.8
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 9.7e-07 57.4 60 51.7
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 9.7e-07 57.4 133 34.6
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.7e-07 57.4 55 60.0
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.3e-06 57.0 55 54.5
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.3e-06 57.0 53 56.6
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.3e-06 57.0 69 52.2
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.7e-06 56.6 94 38.3
DCAR_020574 Daucus carota HOM05D015198 ORTHO05D002992 1.7e-06 56.6 66 43.9
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.2e-06 56.2 57 50.9
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.2e-06 56.2 135 37.8
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 2.8e-06 55.8 52 57.7
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.8e-06 55.8 48 58.3
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.7e-06 55.5 54 53.7
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.7e-06 55.5 54 53.7
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.7e-06 55.5 57 50.9
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.7e-06 55.5 71 43.7
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.7e-06 55.5 134 38.8
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 4.8e-06 55.1 69 50.7
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 4.8e-06 55.1 54 55.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 6.3e-06 54.7 57 52.6
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 6.3e-06 54.7 53 58.5
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 6.3e-06 54.7 51 51.0
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.3e-06 54.7 125 36.8
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.3e-06 54.7 134 35.1
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 6.3e-06 54.7 49 55.1
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 6.3e-06 54.7 71 45.1
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 8.2e-06 54.3 49 59.2
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.2e-06 54.3 58 55.2
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.2e-06 54.3 47 63.8
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.2e-06 54.3 40 62.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.2e-06 54.3 57 52.6
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 8.2e-06 54.3 60 51.7
unitig_748.g7224 Utricularia gibba HOM05D002974 ORTHO05D002992 8.2e-06 54.3 56 53.6


User provided reference genes

Program Settings