Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30307 Striga asiatica HOM05D000176 ORTHO05D000106 1.2e-88 329.7 152 100.0
COL.COLO4_33030 Corchorus olitorius HOM05D000176 ORTHO05D000106 3.6e-45 185.3 137 62.0
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 4.1e-41 171.8 341 34.0
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 2.0e-40 169.5 304 34.2
Haze_13472 Corylus avellana HOM05D000176 ORTHO05D000106 6.1e-37 157.9 114 65.8
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 4.0e-36 155.2 302 32.5
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 5.2e-36 154.8 302 32.8
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 8.8e-36 154.1 302 32.8
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 4.4e-35 151.8 171 45.6
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 5.7e-35 151.4 303 31.4
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.5e-35 151.0 302 31.8
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.5e-35 151.0 302 31.8
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.3e-34 150.2 303 31.4
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 1.3e-34 150.2 303 31.4
Nitab4.5_0003663g0020 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.7e-34 149.8 173 44.5
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.7e-34 149.8 303 31.0
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 6.3e-34 147.9 302 31.5
vmacro12437 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 6.3e-34 147.9 192 43.8
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 1.1e-33 147.1 302 30.8
GSVIVG01000818001 Vitis vinifera HOM05D000176 ORTHO05D000106 7.0e-33 144.4 261 33.3
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 9.1e-33 144.1 303 30.7
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 2.0e-32 142.9 302 30.8
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.0e-32 142.9 302 30.8
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-31 140.2 303 30.0
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 1.7e-31 139.8 302 29.5
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 2.9e-31 139.0 304 29.9
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 8.5e-31 137.5 304 29.6
Sc12g0003730 Simmondsia chinensis HOM05D000176 ORTHO05D000106 1.1e-30 137.1 113 54.0
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 1.5e-30 136.7 302 29.8
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 1.5e-30 136.7 304 29.6
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 1.9e-30 136.3 302 31.1
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 4.2e-30 135.2 314 29.0
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 7.2e-30 134.4 302 30.5
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 9.4e-30 134.0 302 29.8
DCAR_021305 Daucus carota HOM05D000176 ORTHO05D000106 1.2e-29 133.7 107 58.9
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 2.1e-29 132.9 303 29.0
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 3.6e-29 132.1 302 29.8
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 3.6e-29 132.1 302 29.8
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 4.7e-29 131.7 301 29.2
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 8.0e-29 131.0 297 30.6
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 1.0e-28 130.6 301 29.9
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.3e-28 129.4 303 30.4
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 3.0e-28 129.0 340 28.5
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 3.0e-28 129.0 302 29.5
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 3.0e-28 129.0 301 28.9
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.0e-28 128.6 302 29.5
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 6.8e-28 127.9 297 29.6
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 1.5e-27 126.7 303 29.4
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 1.5e-27 126.7 297 28.6
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 1.5e-27 126.7 299 29.4
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 4.8e-26 121.7 297 27.6
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 4.8e-26 121.7 297 27.6
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 4.8e-26 121.7 297 27.6
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 4.8e-26 121.7 297 27.6
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 4.8e-26 121.7 297 27.9
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 6.3e-26 121.3 297 27.9
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 8.3e-26 120.9 297 27.6
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 1.4e-25 120.2 297 27.6
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.8e-25 119.8 302 28.1
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 5.4e-25 118.2 297 27.6
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 7.0e-25 117.9 302 28.1
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 1.1e-22 110.5 57 80.7
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.5e-22 110.2 80 62.5
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.5e-22 110.2 80 62.5
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 1.5e-22 110.2 58 82.8
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 2.5e-22 109.4 58 82.8
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 2.5e-22 109.4 58 79.3
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 2.5e-22 109.4 57 80.7
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 3.2e-22 109.0 57 80.7
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 3.2e-22 109.0 58 77.6
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 4.2e-22 108.6 57 78.9
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 5.5e-22 108.2 57 80.7
Cfa003570 Carpinus fangiana HOM05D000176 ORTHO05D000106 7.2e-22 107.8 107 47.7
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 1.6e-21 106.7 59 74.6
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 2.1e-21 106.3 83 61.4
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 6.1e-21 104.8 302 26.2
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 8.0e-21 104.4 56 76.8
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 2.0e-19 99.8 56 69.6
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 5.7e-19 98.2 293 24.2
Psat3g039360 Pisum sativum HOM05D000176 ORTHO05D000106 1.3e-18 97.1 57 71.9
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 1.4e-17 93.6 294 23.1
Psat4g187840 Pisum sativum HOM05D000176 ORTHO05D000106 7.0e-17 91.3 51 72.5
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 9.2e-17 90.9 51 70.6
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 1.2e-16 90.5 51 72.5
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-16 90.1 51 72.5
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 2.0e-16 89.7 51 72.5
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 2.7e-16 89.4 50 68.0
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 2.7e-16 89.4 51 70.6
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 1.0e-15 87.4 51 68.6
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 1.0e-15 87.4 51 66.7
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 2.3e-15 86.3 51 64.7
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.9e-15 85.9 51 66.7
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 2.9e-15 85.9 51 64.7
Lj3g0023710 Lotus japonicus HOM05D000176 ORTHO05D000106 3.8e-15 85.5 51 66.7
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 5.0e-15 85.1 51 66.7
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.5e-14 82.8 49 71.4
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 2.5e-14 82.8 49 73.5
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 2.5e-14 82.8 49 71.4
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 2.5e-14 82.8 49 71.4
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 2.5e-14 82.8 49 71.4
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 9.5e-14 80.9 49 71.4
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.6e-13 80.1 49 71.4
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 4.7e-13 78.6 62 53.2
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 8.0e-13 77.8 57 61.4
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 1.0e-12 77.4 49 67.3
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 1.0e-12 77.4 49 67.3
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 1.0e-12 77.4 49 67.3
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.0e-12 77.4 58 55.2
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.8e-12 76.6 56 57.1
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.8e-12 76.6 56 57.1
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 3.0e-12 75.9 49 65.3
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 3.0e-12 75.9 49 65.3
TPR.G19280 Trifolium pratense HOM05D000176 ORTHO05D000106 1.7e-10 70.1 56 55.4
Cfa021595 Carpinus fangiana HOM05D000176 ORTHO05D000106 1.1e-09 67.4 35 85.7
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 7.0e-09 64.7 44 63.6
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 9.2e-09 64.3 43 65.1
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 9.2e-09 64.3 43 65.1
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.2e-08 63.9 43 65.1
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 1.2e-08 63.9 43 65.1
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.2e-08 63.9 43 65.1
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.2e-08 63.9 43 65.1
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 2.0e-08 63.2 43 62.8
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 2.0e-08 63.2 43 62.8
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 2.0e-08 63.2 43 62.8
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.7e-08 62.8 43 62.8
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 5.9e-08 61.6 43 62.8
Dinv05007 Davidia involucrata HOM05D000176 ORTHO05D000106 6.6e-07 58.2 28 85.7


User provided reference genes

Program Settings