Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 6.1e-115 417.5 218 100.0
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 4.5e-25 119.0 57 100.0
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 8.8e-21 104.8 59 84.7
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 2.6e-20 103.2 58 82.8
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.3e-20 102.8 58 81.0
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 4.4e-20 102.4 55 87.3
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 7.4e-20 101.7 55 85.5
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 2.2e-19 100.1 55 85.5
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 2.8e-19 99.8 61 78.7
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 6.3e-19 98.6 52 86.5
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 6.3e-19 98.6 55 83.6
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 6.3e-19 98.6 59 76.3
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 1.1e-18 97.8 55 83.6
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.1e-18 97.8 55 81.8
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 1.1e-18 97.8 55 81.8
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 1.4e-18 97.4 63 73.0
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.8e-18 97.1 55 80.0
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.8e-18 97.1 53 83.0
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 1.8e-18 97.1 54 83.3
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 2.4e-18 96.7 55 81.8
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 3.1e-18 96.3 53 83.0
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 3.1e-18 96.3 55 81.8
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.1e-18 96.3 55 80.0
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 3.1e-18 96.3 55 80.0
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.1e-18 96.3 55 80.0
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 3.1e-18 96.3 55 76.4
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 3.1e-18 96.3 51 88.2
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 5.3e-18 95.5 58 74.1
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 7.0e-18 95.1 58 74.1
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 7.0e-18 95.1 58 74.1
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 7.0e-18 95.1 55 80.0
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 9.1e-18 94.7 61 72.1
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 9.1e-18 94.7 58 72.4
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 9.1e-18 94.7 52 84.6
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 1.2e-17 94.4 79 62.0
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 1.2e-17 94.4 53 81.1
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 1.2e-17 94.4 57 77.2
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 1.6e-17 94.0 52 84.6
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 1.6e-17 94.0 52 84.6
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 2.0e-17 93.6 56 75.0
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 2.0e-17 93.6 55 78.2
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 2.0e-17 93.6 58 72.4
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 2.6e-17 93.2 53 81.1
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 3.5e-17 92.8 51 80.4
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 4.5e-17 92.4 58 72.4
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 4.5e-17 92.4 51 82.4
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 5.9e-17 92.0 55 76.4
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 5.9e-17 92.0 55 76.4
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 5.9e-17 92.0 58 72.4
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 5.9e-17 92.0 52 82.7
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 7.7e-17 91.7 56 73.2
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 7.7e-17 91.7 50 82.0
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 7.7e-17 91.7 53 75.5
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.0e-16 91.3 50 84.0
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 1.0e-16 91.3 52 82.7
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.7e-16 90.5 51 80.4
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 2.9e-16 89.7 51 80.4
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 5.0e-16 89.0 58 70.7
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 5.0e-16 89.0 53 75.5
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 5.0e-16 89.0 55 72.7
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 8.5e-16 88.2 55 74.5
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 8.5e-16 88.2 51 78.4
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 1.1e-15 87.8 51 78.4
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.1e-15 87.8 51 78.4
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 1.9e-15 87.0 58 67.2
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 4.2e-15 85.9 47 83.0
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 5.5e-15 85.5 58 69.0
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 5.5e-15 85.5 42 90.5
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 2.1e-14 83.6 44 90.9
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 4.7e-14 82.4 46 80.4
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 6.1e-14 82.0 55 67.3
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 6.1e-14 82.0 41 87.8
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 6.1e-14 82.0 57 66.7
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 8.0e-14 81.6 58 67.2
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 8.0e-14 81.6 41 85.4
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 1.0e-13 81.3 41 87.8
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.8e-13 80.5 41 85.4
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.3e-13 80.1 41 82.9
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 2.3e-13 80.1 45 80.0
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 2.3e-13 80.1 46 80.4
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 2.3e-13 80.1 42 83.3
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 3.0e-13 79.7 47 76.6
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 4.0e-13 79.3 41 85.4
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 2.6e-12 76.6 41 82.9
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 4.4e-12 75.9 43 83.7
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.2e-11 73.6 40 77.5
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.2e-11 73.6 40 77.5
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 1.1e-10 71.2 41 73.2
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 2.7e-09 66.6 47 59.6
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 4.5e-09 65.9 53 62.3
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 7.7e-09 65.1 59 49.2
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 2.9e-08 63.2 34 79.4
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 2.7e-06 56.6 36 77.8


User provided reference genes

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