Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 1.4e-251 872.5 448 100.0
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 1.0e-84 318.2 287 65.5
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 4.5e-72 276.2 286 57.0
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 9.4e-70 268.5 250 57.6
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 2.1e-69 267.3 269 54.3
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 2.1e-69 267.3 257 58.4
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 8.0e-69 265.4 253 56.9
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 1.5e-67 261.2 237 58.6
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 9.8e-67 258.5 267 55.1
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 9.8e-67 258.5 269 52.4
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.3e-66 258.1 285 53.7
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.3e-66 258.1 264 56.1
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.7e-66 257.7 269 52.4
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 6.3e-66 255.8 246 56.1
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 6.3e-66 255.8 246 59.3
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 8.3e-66 255.4 280 52.9
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.4e-65 254.6 248 56.0
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 1.4e-65 254.6 260 55.0
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 2.4e-65 253.8 233 60.9
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 3.1e-65 253.4 248 56.9
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 3.1e-65 253.4 248 55.6
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 4.1e-65 253.1 279 52.7
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 7.0e-65 252.3 269 51.7
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 9.1e-65 251.9 255 56.1
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 1.2e-64 251.5 237 56.5
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.6e-64 251.1 287 51.2
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 3.5e-64 250.0 247 56.3
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 3.5e-64 250.0 232 58.6
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 5.9e-64 249.2 250 56.4
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 5.9e-64 249.2 269 50.6
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 1.0e-63 248.4 277 53.1
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 1.3e-63 248.1 229 57.6
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.3e-63 248.1 229 58.1
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 2.9e-63 246.9 287 52.3
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 2.9e-63 246.9 229 57.2
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.9e-63 246.9 229 57.2
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 2.9e-63 246.9 237 55.3
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 2.9e-63 246.9 239 56.9
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 3.8e-63 246.5 231 59.3
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 5.0e-63 246.1 237 57.0
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 6.6e-63 245.7 236 56.4
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 6.6e-63 245.7 232 58.6
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 6.6e-63 245.7 264 54.2
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 1.1e-62 245.0 257 51.0
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.5e-62 244.6 245 56.3
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 2.5e-62 243.8 269 51.3
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 4.2e-62 243.0 249 54.6
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 5.5e-62 242.7 246 53.3
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 1.2e-61 241.5 246 53.7
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 2.1e-61 240.7 280 48.9
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 2.1e-61 240.7 248 52.8
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 3.6e-61 240.0 267 51.3
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 3.6e-61 240.0 288 50.7
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 4.7e-61 239.6 383 42.6
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 6.1e-61 239.2 233 54.9
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 8.0e-61 238.8 283 48.4
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.0e-60 238.4 238 54.6
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 1.0e-60 238.4 238 54.6
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 1.8e-60 237.7 284 49.6
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 3.0e-60 236.9 236 54.7
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.0e-60 236.5 267 50.9
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 6.8e-60 235.7 247 53.0
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 1.2e-59 235.0 231 56.7
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 2.0e-59 234.2 229 55.5
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 2.6e-59 233.8 231 55.0
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 2.6e-59 233.8 232 53.4
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.6e-59 233.8 267 50.2
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 4.4e-59 233.0 233 54.9
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 9.8e-59 231.9 267 50.6
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 9.8e-59 231.9 265 50.9
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.7e-58 231.1 234 54.7
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 2.2e-58 230.7 246 52.4
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.2e-58 230.7 231 55.4
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 2.2e-58 230.7 242 55.0
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 2.8e-58 230.3 237 54.4
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 2.8e-58 230.3 284 47.9
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 5.4e-57 226.1 229 54.1
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 5.4e-57 226.1 253 52.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 9.2e-57 225.3 251 50.6
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.2e-56 224.9 240 52.1
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 2.0e-56 224.2 251 51.0
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 1.3e-55 221.5 233 53.2
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 1.7e-55 221.1 242 55.0
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 3.7e-50 203.4 259 48.3
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.6e-48 198.0 278 45.0
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 3.5e-48 196.8 196 54.1
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 1.0e-47 195.3 198 56.1
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 3.0e-47 193.7 185 58.4
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 1.8e-44 184.5 244 44.3
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 3.1e-44 183.7 188 52.1
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 1.2e-43 181.8 245 46.9
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 1.3e-42 178.3 187 52.9
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 2.2e-42 177.6 187 52.4
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.1e-41 175.3 199 51.8
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.9e-38 164.5 198 44.4
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.3e-36 157.5 162 55.6
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 7.8e-32 142.5 288 36.8
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 2.1e-29 134.4 149 52.3
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.9e-25 121.3 232 36.2
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 4.2e-25 120.2 119 55.5
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 6.0e-24 116.3 111 47.7
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 2.8e-21 107.5 155 45.2
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 2.7e-16 90.9 236 30.9
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 1.7e-15 88.2 264 29.9
SGA_v2.0_scaffold87G27068 Striga asiatica HOM05D013351 ORTHO05D008918 6.6e-15 86.3 67 64.2
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 1.4e-09 68.6 47 61.7
Cre14.g611450 Chlamydomonas reinhardtii HOM05D002234 ORTHO05D002254 4.3e-06 57.0 110 34.5


User provided reference genes

Program Settings