Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 2.5e-256 888.3 442 100.0
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 8.7e-68 261.9 438 41.6
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 5.0e-63 246.1 439 39.2
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 7.9e-61 238.8 451 38.6
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 4.8e-50 203.0 449 35.4
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 4.1e-49 199.9 465 38.3
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 2.0e-43 181.0 448 33.7
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 6.5e-39 166.0 453 31.1
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 2.3e-36 157.5 334 36.5
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 4.0e-36 156.8 431 32.7
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.0e-31 142.1 448 31.2
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 1.3e-31 141.7 463 32.4
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.3e-31 141.7 508 31.1
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 5.0e-31 139.8 430 30.2
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.9e-30 137.9 440 31.4
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 9.4e-30 135.6 475 28.6
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 1.2e-29 135.2 485 30.7
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 2.1e-29 134.4 426 28.9
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 2.7e-29 134.0 423 30.7
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 4.7e-29 133.3 461 31.0
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 2.3e-28 131.0 433 30.3
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 3.0e-28 130.6 453 31.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 3.0e-28 130.6 515 30.7
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 6.8e-28 129.4 454 29.5
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 1.2e-27 128.6 455 30.5
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.5e-27 128.3 492 28.5
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.5e-27 128.3 448 30.8
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 1.5e-27 128.3 528 29.5
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 2.0e-27 127.9 425 29.9
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 2.0e-27 127.9 346 35.3
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 2.6e-27 127.5 445 30.6
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 9.8e-27 125.6 463 30.2
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 2.2e-26 124.4 446 30.3
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.2e-26 124.4 460 30.2
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 3.7e-26 123.6 431 30.9
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 3.7e-26 123.6 453 29.6
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 4.8e-26 123.2 433 28.6
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 6.3e-26 122.9 436 29.4
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 8.3e-26 122.5 428 30.8
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 2.4e-25 120.9 445 29.2
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 2.4e-25 120.9 435 29.9
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 3.1e-25 120.6 470 29.6
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 4.1e-25 120.2 442 30.5
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 7.0e-25 119.4 447 30.0
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 9.1e-25 119.0 423 29.6
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 2.0e-24 117.9 455 29.2
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 2.7e-24 117.5 471 26.8
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 3.5e-24 117.1 355 31.5
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 3.5e-24 117.1 437 29.5
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 4.5e-24 116.7 427 29.3
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.5e-24 116.7 444 30.0
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 5.9e-24 116.3 450 30.9
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 7.7e-24 115.9 443 28.7
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.0e-23 115.5 428 28.0
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 1.3e-23 115.2 434 27.2
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.8e-23 113.6 470 27.7
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.8e-23 113.6 452 30.5
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 6.5e-23 112.8 419 29.6
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 6.5e-23 112.8 427 29.3
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.9e-22 111.3 539 26.5
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 1.9e-22 111.3 457 28.9
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 2.5e-22 110.9 420 28.8
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.6e-21 108.2 448 28.1
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.6e-21 108.2 448 28.1
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 1.6e-21 108.2 219 38.4
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 2.1e-21 107.8 435 27.6
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 2.1e-21 107.8 371 28.8
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 2.7e-21 107.5 436 25.5
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 4.7e-21 106.7 429 28.4
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 4.7e-21 106.7 424 29.0
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 6.1e-21 106.3 419 29.6
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.4e-20 105.1 337 31.2
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.8e-20 104.8 442 28.1
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 5.2e-20 103.2 442 28.7
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 4.4e-19 100.1 420 26.2
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.3e-18 98.6 437 27.9
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 1.7e-18 98.2 487 26.7
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 2.2e-18 97.8 460 27.4
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 3.7e-18 97.1 464 24.4
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 3.7e-18 97.1 461 28.2
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 3.1e-17 94.0 335 29.6
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 7.0e-17 92.8 112 46.4
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 9.1e-17 92.4 338 31.1
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 2.0e-16 91.3 428 29.0
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 4.5e-16 90.1 345 28.7
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 5.6e-14 83.2 324 28.4
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 1.2e-13 82.0 161 37.3
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 3.0e-12 77.4 255 30.6
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 1.5e-11 75.1 485 25.2
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 2.2e-10 71.2 225 32.0
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 2.9e-10 70.9 102 47.1
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.9e-10 70.9 319 26.6
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.7e-10 70.5 338 25.7
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 6.4e-10 69.7 151 36.4
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 6.4e-10 69.7 174 31.6
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 8.3e-10 69.3 327 28.7
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 4.1e-09 67.0 325 26.8
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 4.6e-08 63.5 319 27.3
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 1.3e-07 62.0 205 28.3
Zm00001eb428340 Zea mays HOM05D007047 ORTHO05D009177 1.3e-07 62.0 445 22.9
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 2.3e-07 61.2 121 34.7
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.1e-06 58.9 188 31.4
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 1.9e-06 58.2 156 34.0
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 2.5e-06 57.8 61 50.8
AL3G44940 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 7.3e-06 56.2 43 60.5
AL8G18000 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 7.3e-06 56.2 43 60.5
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 7.3e-06 56.2 88 42.0


User provided reference genes

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