Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30181 Striga asiatica HOM05D000003 ORTHO05D000022 1.8e-248 862.1 409 100.0
SGA_v2.0_scaffold110G31179 Striga asiatica HOM05D000055 ORTHO05D000057 5.5e-24 116.3 109 62.4
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 7.4e-21 105.9 428 24.5
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 9.7e-21 105.5 194 26.3
Sabra09G0061300 Salix brachista HOM05D000003 ORTHO05D000022 1.1e-19 102.1 449 24.5
TPR.G33526 Trifolium pratense HOM05D000155 ORTHO05D000022 1.9e-16 91.3 144 35.4
Ca_11781_v3 Cicer arietinum L. HOM05D000155 ORTHO05D000022 3.2e-16 90.5 145 33.1
TPR.G5368 Trifolium pratense HOM05D008718 ORTHO05D000022 3.2e-16 90.5 144 33.3
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 7.2e-16 89.4 137 35.8
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 4.6e-15 86.7 432 22.2
QL10p064615 Quercus lobata HOM05D000155 ORTHO05D000022 4.6e-15 86.7 136 32.4
Ca_11916_v3 Cicer arietinum L. HOM05D000003 ORTHO05D000022 6.1e-15 86.3 159 31.4
TPR.G17895 Trifolium pratense HOM05D000003 ORTHO05D000022 1.4e-14 85.1 135 34.8
TPR.G4441 Trifolium pratense HOM05D000003 ORTHO05D000004 2.3e-14 84.3 152 27.0
Lj1g0018212 Lotus japonicus HOM05D000003 ORTHO05D000022 3.9e-14 83.6 300 26.0
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 3.9e-14 83.6 136 32.4
TPR.G38247 Trifolium pratense HOM05D000003 ORTHO05D000004 5.7e-13 79.7 171 26.3
Lalb_Chr07g0182561 Lupinus albus HOM05D000155 ORTHO05D000022 1.3e-12 78.6 137 32.8
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 1.3e-12 78.6 225 28.0
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 1.3e-12 78.6 192 28.6
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 1.3e-12 78.6 137 29.9
arahy.Tifrunner.gnm1.ann1.Y0B8H2 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.7e-12 78.2 136 36.8
Psat1g119200 Pisum sativum HOM05D000003 ORTHO05D000022 1.7e-12 78.2 190 26.8
TPR.G2407 Trifolium pratense HOM05D008718 ORTHO05D010957 3.7e-12 77.0 136 38.2
TPR.G10331 Trifolium pratense HOM05D008718 ORTHO05D000022 4.8e-12 76.6 144 32.6
arahy.Tifrunner.gnm1.ann1.CIE5KM Arachis hypogaea HOM05D000003 ORTHO05D000022 6.3e-12 76.3 136 35.3
RcHm_v2.0_Chr6g0266871 Rosa chinensis HOM05D000003 ORTHO05D000022 6.3e-12 76.3 140 31.4
TPR.G9811 Trifolium pratense HOM05D000179 ORTHO05D000107 8.2e-12 75.9 141 29.1
arahy.Tifrunner.gnm1.ann1.PA7RNP Arachis hypogaea HOM05D000003 ORTHO05D000022 1.4e-11 75.1 142 32.4
TPR.G32733 Trifolium pratense HOM05D000005 ORTHO05D000012 1.4e-11 75.1 141 30.5
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 2.4e-11 74.3 138 34.1
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 2.4e-11 74.3 140 32.9
Lj4g0027011 Lotus japonicus HOM05D000003 ORTHO05D000022 2.4e-11 74.3 136 30.1
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 2.4e-11 74.3 137 29.2
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 3.1e-11 73.9 215 24.7
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 3.1e-11 73.9 215 24.7
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 4.1e-11 73.6 116 34.5
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 6.9e-11 72.8 136 29.4
Lj5g0000021 Lotus japonicus HOM05D010643 ORTHO05D011148 6.9e-11 72.8 140 30.0
arahy.Tifrunner.gnm1.ann1.C14R7W Arachis hypogaea HOM05D000003 ORTHO05D000022 9.1e-11 72.4 127 33.9
Lj1g0008461 Lotus japonicus HOM05D010643 ORTHO05D011148 9.1e-11 72.4 140 30.0
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 2.0e-10 71.2 136 28.7
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 2.6e-10 70.9 250 23.2
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.4e-10 70.5 416 22.4
PSO210G0543 Papaver somniferum HOM05D000003 ORTHO05D000651 3.4e-10 70.5 268 26.1
RcHm_v2.0_Chr1g0334981 Rosa chinensis HOM05D000003 ORTHO05D000022 3.4e-10 70.5 114 36.0
COL.COLO4_30280 Corchorus olitorius HOM05D000155 ORTHO05D000022 4.5e-10 70.1 146 30.1
FvH4_5g34262 Fragaria vesca HOM05D000003 ORTHO05D000022 5.9e-10 69.7 123 30.1
TPR.G36503 Trifolium pratense HOM05D008718 ORTHO05D010957 5.9e-10 69.7 124 33.9
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 7.7e-10 69.3 145 31.0
Nitab4.5_0003985g0030 Nicotiana tabacum HOM05D001426 ORTHO05D001389 7.7e-10 69.3 138 33.3
PSO447G0003 Papaver somniferum HOM05D000003 ORTHO05D001026 7.7e-10 69.3 375 22.7
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 7.7e-10 69.3 401 23.9
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 7.7e-10 69.3 131 30.5
RcHm_v2.0_Chr4g0437331 Rosa chinensis HOM05D000003 ORTHO05D000022 1.0e-09 68.9 133 30.8
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.3e-09 68.6 140 30.7
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 1.3e-09 68.6 146 32.2
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 1.3e-09 68.6 141 29.1
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 1.3e-09 68.6 131 30.5
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 1.7e-09 68.2 136 29.4
MBI13_g43496_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-09 68.2 402 23.4
PSO761G0271 Papaver somniferum HOM05D000003 ORTHO05D000651 2.2e-09 67.8 351 20.8
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.2e-09 67.8 222 25.2
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 3.8e-09 67.0 118 31.4
Hma1.2p1_0931F.1_g238170 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 3.8e-09 67.0 137 28.5
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 3.8e-09 67.0 363 22.6
Lj4g0002379 Lotus japonicus HOM05D000003 ORTHO05D000022 5.0e-09 66.6 176 26.7
Thecc.04G000100 Theobroma cacao HOM05D000024 ORTHO05D000006 5.0e-09 66.6 166 29.5
Aqoxy15s001 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.5e-09 66.2 396 21.5
Aqoxy4G00752 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 6.5e-09 66.2 208 28.4
RcHm_v2.0_Chr4g0426191 Rosa chinensis HOM05D000003 ORTHO05D000022 6.5e-09 66.2 145 28.3
TPR.G23914 Trifolium pratense HOM05D000003 ORTHO05D000004 6.5e-09 66.2 140 24.3
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 8.5e-09 65.9 130 29.2
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 1.1e-08 65.5 121 32.2
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 1.1e-08 65.5 140 27.1
MBI16_g42110_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-08 65.5 368 21.2
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-08 65.5 145 26.9
FvH4_2g12061 Fragaria vesca HOM05D000003 ORTHO05D000022 1.4e-08 65.1 173 24.9
QL06p035443 Quercus lobata HOM05D000003 ORTHO05D000022 1.4e-08 65.1 123 33.3
RcHm_v2.0_Chr3g0486471 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-08 65.1 136 27.9
RcHm_v2.0_Chr7g0200931 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-08 65.1 173 28.9
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-08 65.1 169 24.3
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-08 64.7 151 29.1
PSO675G0794 Papaver somniferum HOM05D000003 ORTHO05D000651 1.9e-08 64.7 347 22.8
Psat7g116320 Pisum sativum HOM05D000003 ORTHO05D000007 1.9e-08 64.7 139 28.8
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.9e-08 64.7 145 26.9
EL10Ac1g00131 Beta vulgaris HOM05D016436 ORTHO05D000022 2.5e-08 64.3 142 28.2
RcHm_v2.0_Chr3g0494391 Rosa chinensis HOM05D000003 ORTHO05D000022 2.5e-08 64.3 145 27.6
CANSAT54G1600 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-08 63.9 280 25.0
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.2e-08 63.5 425 22.4
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 4.2e-08 63.5 155 28.4
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 4.2e-08 63.5 208 27.4
TPR.G35524 Trifolium pratense HOM05D008718 ORTHO05D010957 5.5e-08 63.2 116 31.9
EL10Ac9g23007 Beta vulgaris HOM05D007742 ORTHO05D000022 7.2e-08 62.8 113 30.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-08 62.8 432 20.8
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 9.4e-08 62.4 111 32.4
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 9.4e-08 62.4 145 26.2
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 9.4e-08 62.4 118 29.7
CAN.G681.24 Capsicum annuum HOM05D000016 ORTHO05D000109 1.2e-07 62.0 118 35.6
LjContig00408g0013319 Lotus japonicus HOM05D000003 ORTHO05D000004 1.2e-07 62.0 141 24.8
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 1.6e-07 61.6 144 27.1
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-07 61.6 303 23.8
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-07 61.6 209 24.9
MBI01_g01262_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-07 61.2 151 27.2
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 2.1e-07 61.2 145 26.9
MSTRG.28030 Avicennia marina HOM05D000155 ORTHO05D000022 2.7e-07 60.8 139 28.8
Glyma.03G073738 Glycine max HOM05D000179 ORTHO05D035954 2.7e-07 60.8 89 34.8
PSO063G1248 Papaver somniferum HOM05D003407 ORTHO05D001026 2.7e-07 60.8 211 24.6
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 3.6e-07 60.5 151 28.5
MBI17_g29795_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.6e-07 60.5 197 28.4
TPR.G4558 Trifolium pratense HOM05D000101 ORTHO05D000089 3.6e-07 60.5 97 34.0
Aqoxy1G03921 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 4.7e-07 60.1 139 28.8
Nitab4.5_0001962g0120 Nicotiana tabacum HOM05D000003 ORTHO05D000022 4.7e-07 60.1 131 32.1
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 6.1e-07 59.7 134 25.4
PSO782G0701 Papaver somniferum HOM05D000003 ORTHO05D000651 6.1e-07 59.7 119 32.8
RcHm_v2.0_Chr1g0322281 Rosa chinensis HOM05D000003 ORTHO05D000022 6.1e-07 59.7 126 28.6
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 7.9e-07 59.3 199 25.1
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 7.9e-07 59.3 132 28.8
Atru.chr5.1996 Acer truncatum HOM05D000003 ORTHO05D000022 7.9e-07 59.3 132 28.8
Aqoxy1G03910 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.9e-07 59.3 149 28.2
EL10Ac4g10204 Beta vulgaris HOM05D016436 ORTHO05D000022 7.9e-07 59.3 108 30.6
COL.COLO4_31628 Corchorus olitorius HOM05D000774 ORTHO05D000602 7.9e-07 59.3 133 29.3
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 7.9e-07 59.3 112 32.1
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-06 58.9 159 26.4
FvH4_7g14701 Fragaria vesca HOM05D000021 ORTHO05D000010 1.0e-06 58.9 140 28.6
Lj1P1214T60 Lonicera japonica HOM05D000155 ORTHO05D000022 1.0e-06 58.9 152 26.3
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 1.0e-06 58.9 152 24.3
CANSAT78G1465 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-06 58.5 442 21.0
Lsat_1_v5_gn_4_58600 Lactuca sativa HOM05D000774 ORTHO05D000602 1.4e-06 58.5 157 26.8
Lj6g0012103 Lotus japonicus HOM05D000155 ORTHO05D000022 1.4e-06 58.5 160 26.9
vmacro06797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000022 1.4e-06 58.5 114 28.9
CANSAT80G0055 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-06 58.2 197 25.9
MBI09_g12251_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-06 58.2 162 26.5
MBI18_g01152_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-06 58.2 163 27.0
RcHm_v2.0_Chr6g0271761 Rosa chinensis HOM05D000003 ORTHO05D000022 1.8e-06 58.2 143 27.3
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.8e-06 58.2 132 28.0
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 2.3e-06 57.8 136 30.1
PSO063G5580 Papaver somniferum HOM05D000003 ORTHO05D000651 2.3e-06 57.8 118 30.5
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 2.3e-06 57.8 141 24.8
Thecc.03G325600 Theobroma cacao HOM05D000003 ORTHO05D000006 2.3e-06 57.8 133 31.6
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-06 57.4 145 27.6
PSO832G4146 Papaver somniferum HOM05D000003 ORTHO05D000651 3.0e-06 57.4 114 32.5
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 3.0e-06 57.4 137 24.1
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 3.0e-06 57.4 129 25.6
QL01p016224 Quercus lobata HOM05D000155 ORTHO05D000022 3.0e-06 57.4 129 24.8
Cc02_g12270 Coffea canephora HOM05D000155 ORTHO05D000022 3.9e-06 57.0 157 27.4
PGSC0003DMG400014015 Solanum tuberosum HOM05D008381 ORTHO05D004636 3.9e-06 57.0 129 29.5
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-06 56.6 131 27.5
MBI18_g21526_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.1e-06 56.6 249 21.7
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.1e-06 56.6 109 31.2
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.1e-06 56.6 150 28.7
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-06 56.2 145 26.9
MBI03_g12760_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.7e-06 56.2 150 30.0
MBI04_g05747_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.7e-06 56.2 167 26.3
Psat1g022800 Pisum sativum HOM05D000003 ORTHO05D011085 6.7e-06 56.2 110 26.4
Thecc.02G366600 Theobroma cacao HOM05D000003 ORTHO05D000006 6.7e-06 56.2 141 31.9
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 6.7e-06 56.2 132 30.3
Atru.chr3.3369 Acer truncatum HOM05D000003 ORTHO05D000167 8.8e-06 55.8 132 34.1
MBI02_g08989_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.8e-06 55.8 132 28.8
PSO063G0852 Papaver somniferum HOM05D000003 ORTHO05D000004 8.8e-06 55.8 115 32.2


User provided reference genes

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