Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 9.3e-159 563.5 292 100.0
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 1.3e-27 127.9 61 98.4
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 1.3e-27 127.9 61 98.4
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 1.3e-27 127.9 61 98.4
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.3e-27 127.9 61 98.4
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 2.2e-27 127.1 61 96.7
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 2.2e-27 127.1 61 96.7
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 2.2e-27 127.1 61 96.7
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 2.2e-27 127.1 61 96.7
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 2.2e-27 127.1 61 96.7
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 2.9e-27 126.7 61 96.7
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 2.9e-27 126.7 61 96.7
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 1.1e-26 124.8 61 93.4
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 1.1e-26 124.8 61 93.4
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.4e-26 124.4 60 96.7
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 1.4e-26 124.4 60 96.7
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 1.9e-26 124.0 61 96.7
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 2.4e-26 123.6 61 93.4
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 2.4e-26 123.6 61 93.4
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 2.4e-26 123.6 60 95.0
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 3.2e-26 123.2 60 96.7
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 3.2e-26 123.2 61 93.4
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 4.2e-26 122.9 61 95.1
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 4.2e-26 122.9 61 95.1
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 4.2e-26 122.9 60 95.0
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 5.5e-26 122.5 61 91.8
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 5.5e-26 122.5 61 91.8
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 7.1e-26 122.1 60 93.3
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 7.1e-26 122.1 60 93.3
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 7.1e-26 122.1 61 91.8
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 9.3e-26 121.7 61 93.4
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-25 121.3 60 93.3
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-25 121.3 60 93.3
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 1.6e-25 120.9 60 91.7
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 2.1e-25 120.6 61 91.8
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 2.7e-25 120.2 60 91.7
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 2.7e-25 120.2 60 91.7
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 3.5e-25 119.8 61 90.2
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 4.6e-25 119.4 60 91.7
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 4.6e-25 119.4 60 91.7
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 4.6e-25 119.4 60 91.7
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 4.6e-25 119.4 61 88.5
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 6.0e-25 119.0 60 90.0
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 6.0e-25 119.0 61 91.8
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 6.0e-25 119.0 61 91.8
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 1.3e-24 117.9 61 90.2
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.3e-24 117.9 60 88.3
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 1.3e-24 117.9 61 90.2
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 1.8e-24 117.5 61 90.2
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 1.8e-24 117.5 60 90.0
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 2.3e-24 117.1 61 90.2
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 2.3e-24 117.1 61 90.2
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 2.3e-24 117.1 61 88.5
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 2.3e-24 117.1 61 90.2
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 3.0e-24 116.7 61 88.5
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 3.0e-24 116.7 60 90.0
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.0e-24 116.7 60 90.0
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.0e-24 116.7 60 90.0
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.0e-24 116.7 60 90.0
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 3.0e-24 116.7 61 88.5
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 3.9e-24 116.3 61 88.5
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 6.7e-24 115.5 61 86.9
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.1e-23 114.8 71 74.6
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.1e-23 114.8 60 88.3
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.5e-23 114.4 61 86.9
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.9e-23 114.0 60 85.0
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 1.9e-23 114.0 67 83.6
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 3.3e-23 113.2 60 86.7
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 3.3e-23 113.2 61 86.9
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 3.3e-23 113.2 61 83.6
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 3.3e-23 113.2 61 85.2
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 3.3e-23 113.2 61 83.6
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 4.3e-23 112.8 61 83.6
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 4.3e-23 112.8 60 85.0
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 4.3e-23 112.8 60 85.0
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 5.6e-23 112.5 61 85.2
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 5.6e-23 112.5 60 85.0
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 5.6e-23 112.5 60 86.7
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 5.6e-23 112.5 61 85.2
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 7.4e-23 112.1 60 85.0
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 7.4e-23 112.1 60 85.0
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 7.4e-23 112.1 61 85.2
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 9.6e-23 111.7 61 85.2
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 9.6e-23 111.7 60 85.0
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 1.3e-22 111.3 60 85.0
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.6e-22 110.9 61 83.6
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 2.1e-22 110.5 60 85.0
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 2.8e-22 110.2 60 83.3
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 3.7e-22 109.8 61 83.6
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.1e-21 108.2 60 83.3
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 1.4e-21 107.8 74 74.3
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.5e-20 104.4 61 77.0
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 5.8e-20 102.4 61 82.0
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.3e-19 101.3 49 91.8
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 1.3e-19 101.3 114 51.8
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.0e-16 91.7 47 89.4
SGA_v2.0_scaffold25G10712 Striga asiatica HOM05D000386 ORTHO05D000406 1.1e-13 81.6 91 53.8
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 4.1e-13 79.7 74 54.1
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 4.1e-13 79.7 76 53.9
SGA_v2.0_scaffold60G20848 Striga asiatica HOM05D002840 ORTHO05D003088 4.5e-12 76.3 136 40.4
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 1.3e-11 74.7 59 55.9
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 8.5e-11 72.0 34 91.2
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 1.1e-10 71.6 39 82.1
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.4e-10 71.2 34 94.1
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 1.9e-10 70.9 34 91.2
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 2.5e-10 70.5 34 88.2
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 5.5e-10 69.3 35 85.7
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 2.1e-09 67.4 59 52.5
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 2.7e-09 67.0 34 82.4
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 4.6e-09 66.2 34 82.4
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 4.6e-09 66.2 34 82.4
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.8e-08 64.3 38 73.7
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.0e-08 63.5 34 82.4
SGA_v2.0_scaffold42G15989 Striga asiatica HOM05D055315 ORTHO05D402234 3.9e-08 63.2 40 80.0
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.1e-07 61.6 34 79.4
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 3.3e-07 60.1 34 76.5
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 4.3e-07 59.7 33 72.7
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 7.4e-07 58.9 59 49.2
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 1.3e-06 58.2 31 77.4


User provided reference genes

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