Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.0e-49 198.4 111 100.0
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 7.3e-48 193.7 111 96.4
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 3.6e-47 191.4 111 95.5
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 3.1e-46 188.3 111 91.9
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 3.4e-45 184.9 111 91.0
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 4.9e-44 181.0 110 89.1
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 4.9e-44 181.0 104 94.2
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 90.1
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.4e-43 179.5 112 91.1
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 3.2e-43 178.3 109 91.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 7.1e-43 177.2 109 89.0
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 9.3e-43 176.8 110 87.3
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 9.3e-43 176.8 112 88.4
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.3e-43 176.8 111 87.4
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.2e-42 176.4 109 89.9
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 87.4
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.6e-42 176.0 109 89.0
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 87.4
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.5e-42 174.9 109 89.0
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.6e-42 174.5 109 88.1
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 86.5
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.6e-42 174.5 109 87.2
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 4.6e-42 174.5 109 87.2
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.0e-41 173.3 109 85.3
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.0e-41 173.3 110 89.1
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.0e-41 173.3 109 88.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 1.3e-41 172.9 109 89.0
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.7e-41 172.6 111 86.5
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.7e-41 172.6 112 88.4
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 2.3e-41 172.2 109 88.1
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 86.2
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 86.2
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 86.2
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 86.2
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 87.2
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 5.1e-41 171.0 110 88.2
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 5.1e-41 171.0 109 86.2
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 5.1e-41 171.0 110 87.3
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 6.6e-41 170.6 110 86.4
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 85.6
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 6.6e-41 170.6 109 86.2
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 6.6e-41 170.6 109 86.2
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 6.6e-41 170.6 109 86.2
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 8.7e-41 170.2 109 85.3
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.1e-40 169.9 107 87.9
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.5e-40 169.5 109 86.2
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.9e-40 169.1 111 83.8
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.9e-40 169.1 109 86.2
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.5e-40 168.7 111 83.8
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.5e-40 168.7 111 83.8
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 2.5e-40 168.7 109 83.5
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.5e-40 168.7 109 85.3
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 84.7
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 84.7
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 5.6e-40 167.5 110 86.4
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 5.6e-40 167.5 109 87.2
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 83.8
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 7.3e-40 167.2 105 84.8
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 82.9
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 9.6e-40 166.8 112 83.9
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 2.1e-39 165.6 109 85.3
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 2.1e-39 165.6 110 84.5
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.1e-39 165.6 108 86.1
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 3.6e-39 164.9 109 85.3
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 4.8e-39 164.5 125 77.6
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 82.1
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.1e-38 163.3 110 83.6
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.4e-38 162.9 110 86.4
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.8e-38 162.5 131 72.5
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 3.1e-38 161.8 111 81.1
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 4.0e-38 161.4 112 79.5
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 9.0e-38 160.2 113 81.4
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.2e-37 159.8 110 80.9
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.5e-37 159.5 109 81.7
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 2.0e-37 159.1 113 78.8
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.0e-37 159.1 112 81.2
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 80.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 80.9
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 3.4e-37 158.3 111 80.2
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 5.8e-37 157.5 110 80.0
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.8e-37 157.5 109 78.0
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.3e-36 156.4 99 85.9
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.8e-36 154.8 110 78.2
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 3.8e-36 154.8 110 78.2
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 4.9e-36 154.5 101 82.2
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 4.9e-36 154.5 110 78.2
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 78.2
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 78.2
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 78.2
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 78.2
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 76.4
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 78.4
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.4e-35 152.9 111 79.3
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.4e-35 152.9 113 78.8
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.4e-35 152.9 110 76.4
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 2.4e-35 152.1 110 76.4
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 77.5
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 77.3
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 9.3e-35 150.2 97 86.6
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 9.3e-35 150.2 110 76.4
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.2e-34 149.8 98 82.7
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 2.1e-34 149.1 110 76.4
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 2.1e-34 149.1 109 77.1
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.1e-34 149.1 106 80.2
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 3.5e-34 148.3 111 75.7
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 7.9e-34 147.1 110 75.5
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 6.7e-33 144.1 97 83.5
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 8.7e-33 143.7 112 78.6
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 2.5e-32 142.1 105 75.2
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 7.4e-32 140.6 110 70.9
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.6e-32 140.2 109 73.4
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 2.8e-31 138.7 110 72.7
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 4.8e-31 137.9 97 80.4
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.0e-30 134.8 180 52.2
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.5e-29 132.9 104 73.1
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 2.0e-29 132.5 83 88.0
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.5e-29 131.3 109 71.6
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.1e-27 126.7 85 83.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.2e-27 125.2 109 69.7
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.2e-26 123.2 96 68.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.3e-23 113.2 107 65.4
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 8.2e-23 110.5 110 61.8
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.6e-21 105.5 68 85.3
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.3e-17 92.4 62 85.5
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.1e-16 90.1 57 80.7
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.3e-15 86.7 48 91.7
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 3.7e-15 85.1 58 81.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-13 80.1 92 56.5
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 5.9e-13 77.8 62 69.4
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.7e-12 76.3 62 71.0
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 2.2e-12 75.9 109 46.8
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 2.5e-11 72.4 53 79.2
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 7.2e-11 70.9 57 71.9
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 3.7e-07 58.5 102 42.2
MCO05G089 Micromonas commoda HOM05D005046 ORTHO05D006194 1.4e-06 56.6 63 52.4


User provided reference genes

Program Settings