Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 3861.2 1956 100.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2617.0 1974 70.7
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2610.5 2033 69.1
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2382.1 2001 64.8
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2217.2 1973 60.3
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2191.4 1979 60.4
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2185.2 1879 61.7
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2138.2 1921 60.3
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2109.3 2006 59.0
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2080.8 1988 58.3
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2059.6 1921 57.7
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2051.9 2025 56.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2050.4 2061 56.0
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2008.8 1938 57.5
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2006.9 2024 54.5
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1999.6 1992 55.7
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1990.7 1961 55.9
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1990.3 2077 53.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1988.0 1958 56.4
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1988.0 1924 57.1
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1980.7 2074 54.0
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1973.0 1966 55.4
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1964.9 2019 54.7
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 1985 54.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1945.6 1998 54.3
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1945.2 1934 55.6
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1938.7 1975 54.5
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1938.3 2031 53.9
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1919.4 2027 53.3
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1913.7 2033 53.4
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1907.9 1942 55.6
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1907.1 2005 53.7
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1905.6 1940 54.6
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1904.0 1944 54.0
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1902.5 2031 52.4
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1899.0 2021 53.4
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1895.9 1957 54.4
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1890.5 1946 54.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1880.9 1955 54.3
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1880.1 1955 52.7
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1876.7 1976 53.8
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1872.4 1968 53.0
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1868.2 1993 52.7
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1868.2 1937 53.2
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1866.7 1994 51.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1865.1 1998 52.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1859.7 1974 52.9
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1850.1 1921 53.7
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1848.9 1976 52.4
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1845.1 1935 52.6
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1839.3 1973 52.5
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1836.6 1934 52.7
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1835.8 2060 50.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1832.8 1932 52.8
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1826.6 2060 51.3
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1822.8 2074 50.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1801.2 1967 51.6
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1801.2 1937 52.5
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1785.8 2133 49.1
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1784.6 2002 50.3
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1782.3 1793 54.3
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1770.4 1866 53.2
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1764.2 2003 50.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1759.2 1926 50.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1742.6 1959 50.1
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1736.5 1994 50.8
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1729.1 1904 50.8
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1727.6 1901 51.6
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1721.8 1921 50.8
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1719.9 1914 50.3
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1715.3 1910 50.0
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1714.9 1920 50.5
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1711.4 1903 50.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1708.3 1907 50.6
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1704.5 1909 50.0
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1698.3 1902 50.3
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1685.2 1941 49.4
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1679.8 1938 49.1
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1659.4 1896 49.7
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1657.1 1921 49.4
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1617.8 1920 50.1
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1605.9 1957 49.9
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1535.8 2179 43.6
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1514.6 1557 55.8
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1401.7 1607 49.6
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1377.1 1724 46.8
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1316.6 1115 62.9
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1241.5 1377 52.0
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1135.2 2224 35.9
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1076.2 2186 35.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 9.4e-311 1071.2 1926 36.6
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 9.2e-279 964.9 2080 33.4
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.4e-263 913.7 800 62.8
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.1e-226 792.0 798 56.9
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.0e-208 732.3 801 53.9
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.5e-207 728.4 1377 37.7
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 2.5e-207 727.6 699 55.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 8.6e-200 702.6 1157 38.0
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 3.2e-199 700.7 2024 29.8
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 4.1e-162 577.4 768 46.7
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.4e-157 561.6 432 66.9
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.4e-149 535.8 359 73.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 3.9e-144 517.7 700 44.9
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.5e-143 515.0 747 44.0
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 8.3e-78 297.4 480 39.4
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.5e-76 291.6 191 76.4
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 8.6e-75 287.3 212 65.6
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.1e-61 243.8 353 38.5
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.0e-51 209.1 305 43.0
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.9e-50 206.5 223 52.0
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 1.1e-42 180.6 254 42.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.4e-40 173.7 253 41.5
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.4e-31 142.5 128 52.3
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 5.1e-27 128.6 200 38.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 2.8e-25 122.9 71 83.1
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 5.8e-23 115.2 122 49.2
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 5.1e-19 102.1 134 38.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.6e-17 97.1 116 48.3
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 6.2e-17 95.1 486 24.7
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 8.4e-14 84.7 70 55.7
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 2.5e-13 83.2 68 61.8
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 3.3e-10 72.8 302 26.8
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 4.3e-10 72.4 66 45.5
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 2.2e-06 60.1 41 68.3


User provided reference genes

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