Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 0.0e+00 1164.1 546 100.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 6.4e-246 854.0 495 80.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.1e-240 836.6 495 77.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.1e-234 816.6 500 74.8
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.4e-222 773.9 482 73.0
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.6e-220 769.6 462 74.5
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.6e-220 769.6 462 74.5
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.8e-219 766.1 457 75.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.3e-218 761.9 471 74.5
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 7.4e-218 760.8 462 74.5
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.0e-215 752.7 454 73.6
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.6e-215 752.3 462 72.9
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.7e-214 749.6 488 69.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.9e-214 748.8 462 72.5
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.0e-214 748.0 465 72.3
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.9e-213 746.1 441 76.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.5e-213 745.7 425 77.6
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.5e-213 745.7 524 66.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 4.2e-213 745.0 488 69.3
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 9.3e-213 743.8 432 76.2
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 9.3e-213 743.8 456 73.9
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 7.9e-212 740.7 445 75.3
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.8e-211 739.6 483 70.0
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.8e-211 739.6 470 71.7
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.0e-211 738.8 430 75.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 3.0e-211 738.8 441 75.3
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.5e-210 736.5 431 74.5
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.9e-210 736.1 426 76.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 5.7e-210 734.6 462 72.1
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 7.4e-210 734.2 453 73.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 9.7e-210 733.8 463 71.9
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.6e-209 733.0 465 71.6
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.7e-209 731.9 446 75.1
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.4e-208 729.9 456 73.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 9.1e-208 727.2 447 74.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 2.6e-207 725.7 459 72.8
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 3.4e-207 725.3 466 71.5
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.0e-206 723.8 442 73.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.3e-206 723.4 460 70.7
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.2e-206 722.6 423 76.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.8e-206 721.8 426 75.8
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 5.0e-206 721.5 468 69.7
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 6.5e-206 721.1 491 69.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.9e-205 719.5 497 66.0
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.9e-205 719.5 427 75.2
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 2.5e-205 719.2 460 70.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 7.2e-205 717.6 442 73.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 7.2e-205 717.6 425 75.3
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 7.2e-205 717.6 466 70.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.2e-204 716.8 427 73.8
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.6e-204 716.5 515 64.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.6e-204 716.5 492 67.1
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.1e-204 716.1 425 74.1
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.1e-204 716.1 468 70.3
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.7e-204 715.7 425 74.1
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 4.6e-204 714.9 505 67.5
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.6e-204 714.9 478 68.8
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 6.1e-204 714.5 425 74.1
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 7.9e-204 714.1 425 74.1
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.3e-203 712.6 429 74.4
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 8.8e-203 710.7 436 72.7
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.5e-202 709.9 429 73.4
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 2.0e-202 709.5 423 73.8
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.0e-202 709.5 441 72.3
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.7e-202 708.0 462 69.5
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 5.7e-202 708.0 432 73.6
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.3e-201 706.8 427 74.5
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.3e-201 704.5 462 69.3
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.1e-200 701.8 503 64.2
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 6.9e-200 701.0 469 68.7
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.5e-199 699.9 469 69.9
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 4.5e-199 698.4 467 68.3
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.0e-198 697.2 459 69.1
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.3e-198 696.8 496 66.1
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.7e-198 696.4 459 68.8
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.7e-198 696.4 494 66.0
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.7e-198 696.4 433 71.6
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 3.8e-198 695.3 465 67.5
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.0e-198 694.9 433 72.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 7.2e-197 691.0 472 67.2
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 7.2e-197 691.0 472 67.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.1e-196 689.5 458 71.8
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.9e-196 687.6 491 66.4
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.0e-195 687.2 456 67.8
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-195 686.8 466 65.7
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.3e-195 686.0 425 72.0
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 6.7e-195 684.5 502 64.5
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.4e-194 681.8 454 67.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.8e-192 676.4 471 66.2
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 7.0e-192 674.5 425 69.6
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.5e-191 672.2 486 65.2
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.6e-188 663.3 446 67.9
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.6e-188 663.3 585 55.2
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.8e-185 652.5 458 62.2
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.7e-185 652.1 378 77.2
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 5.3e-184 648.3 418 69.9
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 5.0e-182 641.7 380 75.5
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 5.0e-182 641.7 380 75.5
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.1e-181 640.6 374 76.2
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.5e-178 630.2 426 68.8
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.3e-177 627.1 436 67.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-174 617.1 380 74.2
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.1e-168 595.5 363 74.4
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.0e-167 593.2 343 76.7
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.9e-166 589.3 417 64.7
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 2.5e-165 586.3 427 63.2
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.4e-163 580.5 408 66.7
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.0e-163 579.3 462 58.9
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.0e-163 578.9 325 77.2
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-160 570.9 425 64.2
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 7.8e-159 564.7 427 60.7
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.7e-158 563.5 431 58.7
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.0e-155 554.3 518 54.1
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.0e-146 523.5 396 58.6
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.9e-145 519.6 449 53.2
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 8.1e-140 501.5 321 67.9
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 6.8e-139 498.4 426 58.5
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.6e-132 477.2 435 53.1
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.3e-129 467.6 270 75.6
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.6e-119 432.6 254 77.2
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 6.5e-105 385.6 456 43.0
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.3e-100 371.3 218 74.8
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.4e-85 319.7 184 78.8
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 7.4e-77 292.4 162 79.0
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.3e-68 265.0 426 39.0
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.5e-65 252.3 148 75.7
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.6e-63 246.9 416 35.6
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.0e-54 217.2 172 62.8
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.8e-53 212.2 110 80.0
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 3.8e-49 200.3 151 62.3
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.1e-48 198.7 148 56.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.8e-45 185.7 118 70.3
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.0e-41 174.1 109 73.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.1e-38 165.6 185 48.6
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.8e-34 149.4 125 55.2
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 9.9e-29 132.5 186 40.9
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.2e-18 99.0 60 70.0
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-16 92.4 61 63.9
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.3e-08 64.3 159 34.0
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.8e-06 58.5 41 58.5


User provided reference genes

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