Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.3e-51 206.1 102 100.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 9.8e-31 136.7 100 72.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.4e-29 131.0 98 72.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.4e-29 131.0 98 72.4
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.8e-27 124.8 105 66.7
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.6e-25 118.2 105 66.7
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.0e-25 117.1 98 62.2
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.0e-24 114.8 96 69.8
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 9.8e-23 110.2 105 61.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 3.1e-21 105.1 102 59.8
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.2e-20 103.2 106 57.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.6e-20 102.8 103 51.5
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.0e-20 102.4 96 58.3
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.0e-20 102.4 96 58.3
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.0e-20 102.4 96 58.3
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.5e-20 101.3 114 56.1
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 5.0e-19 97.8 96 55.2
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 6.6e-19 97.4 95 61.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.1e-18 96.7 112 55.4
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.5e-18 95.5 91 60.4
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.3e-18 95.1 103 53.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.3e-18 94.7 90 61.1
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.6e-18 94.4 99 58.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.6e-18 94.4 85 60.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 7.3e-18 94.0 93 64.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 7.3e-18 94.0 103 53.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 7.3e-18 94.0 93 58.1
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.2e-17 93.2 94 58.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.6e-17 92.8 93 58.1
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.1e-17 92.4 92 64.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 2.1e-17 92.4 85 60.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.8e-17 92.0 84 61.9
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.8e-17 92.0 90 55.6
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.6e-17 91.7 102 53.9
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.6e-17 91.7 102 53.9
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 3.6e-17 91.7 106 53.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.6e-17 91.7 89 56.2
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.7e-17 91.3 93 55.9
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.7e-17 91.3 105 53.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 6.1e-17 90.9 117 52.1
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 8.0e-17 90.5 94 56.4
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-16 89.7 89 56.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-16 89.7 97 56.7
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-16 89.0 117 52.1
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.3e-16 89.0 104 50.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.0e-16 88.6 89 57.3
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.0e-16 88.6 99 54.5
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.0e-16 88.6 96 55.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 5.2e-16 87.8 117 51.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.2e-16 87.8 114 52.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.2e-16 87.8 89 57.3
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.8e-16 87.4 85 58.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 8.9e-16 87.0 106 48.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 8.9e-16 87.0 101 52.5
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.2e-15 86.7 100 53.0
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-15 86.7 89 56.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.2e-15 86.7 98 54.1
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.5e-15 86.3 114 51.8
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-15 86.3 99 51.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.5e-15 86.3 101 53.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.0e-15 85.9 84 57.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.0e-15 85.9 99 51.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.0e-15 85.9 86 58.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.0e-15 85.9 97 53.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 2.6e-15 85.5 94 52.1
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.6e-15 85.5 96 51.0
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.6e-15 85.5 95 50.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 4.4e-15 84.7 98 54.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.4e-15 84.7 87 54.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 7.5e-15 84.0 97 55.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 9.8e-15 83.6 100 52.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.3e-14 83.2 88 54.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.3e-14 83.2 95 50.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-14 83.2 99 50.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.3e-14 83.2 99 49.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-14 83.2 96 54.2
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-14 82.8 93 52.7
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-14 82.8 93 52.7
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.2e-14 82.4 109 47.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.7e-14 81.6 106 45.3
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 3.7e-14 81.6 91 56.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 6.4e-14 80.9 91 56.0
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 8.3e-14 80.5 95 52.6
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.3e-14 80.5 89 52.8
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-13 80.1 97 50.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.4e-13 79.7 105 51.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-13 79.3 93 51.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.8e-13 79.3 89 51.7
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.8e-13 79.3 90 58.9
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.8e-13 79.3 95 50.5
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.8e-13 79.3 99 47.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.4e-13 79.0 92 56.5
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.4e-13 79.0 100 53.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.4e-13 79.0 99 48.5
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-13 78.6 89 49.4
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 9.2e-13 77.0 101 45.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-12 76.6 101 45.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-12 76.6 102 50.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.6e-12 76.3 99 51.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.7e-12 75.5 101 44.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.5e-12 75.1 107 43.9
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 6.0e-12 74.3 104 47.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 6.0e-12 74.3 88 50.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 7.8e-12 73.9 98 50.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 7.8e-12 73.9 110 46.4
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-11 73.6 100 40.0
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.0e-11 73.6 100 40.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.0e-11 73.6 100 40.0
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-11 73.6 84 50.0
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.0e-11 73.6 102 50.0
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.3e-11 72.4 89 47.2
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.3e-11 72.4 103 46.6
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 3.0e-11 72.0 102 44.1
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.9e-11 71.6 92 48.9
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.9e-11 71.6 84 50.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.0e-11 71.2 99 44.4
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 5.0e-11 71.2 103 45.6
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.6e-11 70.9 93 49.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.6e-11 70.9 119 46.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.6e-11 70.9 119 46.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.6e-11 70.5 93 50.5
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-10 70.1 79 53.2
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.1e-10 70.1 99 45.5
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-10 70.1 87 46.0
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-10 70.1 95 43.2
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-10 69.7 88 51.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-10 69.7 115 44.3
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.9e-10 69.3 96 47.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.9e-10 69.3 106 50.0
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.9e-10 69.3 87 54.0
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.5e-10 68.9 85 44.7
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.5e-10 68.9 101 47.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.3e-10 68.6 96 44.8
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.6e-09 66.2 89 49.4
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.8e-09 65.5 84 47.6
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.8e-09 65.5 89 48.3
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.6e-09 65.1 89 51.7
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.6e-09 65.1 89 48.3
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.6e-09 65.1 84 47.6
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.7e-09 64.7 96 43.8
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 6.2e-09 64.3 101 43.6
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.2e-09 64.3 89 47.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-08 63.5 83 48.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.4e-08 63.2 89 47.2
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-08 63.2 85 48.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-08 63.2 85 48.2
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 95 45.3
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 95 45.3
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.4e-08 63.2 95 45.3
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 93 52.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-08 63.2 99 39.4
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.8e-08 62.8 108 42.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-08 62.8 92 44.6
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.8e-08 62.8 95 45.3
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.8e-08 62.8 83 45.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-08 62.4 82 42.7
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.3e-08 62.4 84 47.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.1e-08 62.0 89 48.3
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.1e-08 62.0 87 48.3
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.1e-08 62.0 87 48.3
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 4.0e-08 61.6 100 41.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.2e-08 61.2 92 44.6
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 5.2e-08 61.2 86 46.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.8e-08 60.8 87 44.8
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.9e-08 60.5 119 39.5
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.2e-07 60.1 79 44.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.0e-07 59.3 81 46.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.0e-07 59.3 91 45.1
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 3.4e-07 58.5 82 40.2
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.4e-07 58.5 101 41.6
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.7e-06 56.2 126 41.3
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.7e-06 56.2 88 44.3
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.7e-06 56.2 95 44.2
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.9e-06 55.5 109 41.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 8.3e-06 53.9 80 47.5


User provided reference genes

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