Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.6e-180 636.0 313 100.0
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.0e-58 230.3 374 43.0
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.2e-47 194.5 337 40.4
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.6e-39 166.0 386 33.9
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.0e-38 164.9 361 36.6
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 3.0e-38 163.3 357 36.1
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 2.5e-37 160.2 336 37.2
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 5.6e-37 159.1 359 35.7
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 2.1e-36 157.1 346 33.2
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 4.8e-36 156.0 363 34.4
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 4.8e-36 156.0 357 31.7
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 6.2e-36 155.6 316 34.8
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 3.1e-35 153.3 386 33.2
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.3e-35 152.5 339 35.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 5.3e-35 152.5 360 33.9
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 6.9e-35 152.1 338 33.7
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 6.9e-35 152.1 346 34.1
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 2.0e-34 150.6 332 34.3
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 2.6e-34 150.2 363 33.3
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 3.4e-34 149.8 336 32.7
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.4e-34 149.8 383 32.6
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 4.5e-34 149.4 361 32.4
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 5.8e-34 149.1 355 34.6
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 5.8e-34 149.1 368 33.7
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.0e-33 148.3 355 34.6
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.2e-33 147.1 395 33.9
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.8e-33 146.4 341 32.8
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.8e-33 146.4 354 33.3
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.9e-33 146.0 344 33.4
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 6.4e-33 145.6 358 32.4
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 8.4e-33 145.2 344 32.6
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.1e-32 144.8 177 45.2
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.9e-32 144.1 337 33.2
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.9e-32 144.1 178 42.7
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 3.2e-32 143.3 336 33.0
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.2e-32 143.3 197 42.1
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 4.2e-32 142.9 338 31.7
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.2e-32 142.9 351 33.9
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 4.2e-32 142.9 365 32.9
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 7.1e-32 142.1 407 32.2
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 9.3e-32 141.7 398 32.2
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 1.2e-31 141.4 368 33.7
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.2e-31 141.4 332 33.1
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 2.7e-31 140.2 358 31.8
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.5e-31 139.8 215 39.1
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 6.0e-31 139.0 356 29.2
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 6.0e-31 139.0 336 31.2
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.0e-30 138.3 363 32.8
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.3e-30 137.9 357 31.4
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.8e-30 137.5 335 32.2
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.8e-30 137.5 359 30.9
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.0e-30 136.7 367 31.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 3.9e-30 136.3 338 34.0
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 3.9e-30 136.3 187 41.2
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 3.9e-30 136.3 366 31.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 5.1e-30 136.0 367 31.9
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 6.7e-30 135.6 349 32.4
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.9e-29 134.0 195 40.0
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 7.4e-29 132.1 223 35.4
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 7.4e-29 132.1 175 41.1
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.3e-28 131.3 350 34.6
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-28 131.3 396 30.8
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.6e-28 131.0 325 32.3
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 1.6e-28 131.0 365 31.2
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 2.1e-28 130.6 384 31.0
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.8e-28 130.2 369 30.6
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.8e-28 130.2 357 32.2
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.8e-28 130.2 356 32.9
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 3.7e-28 129.8 386 31.3
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 4.8e-28 129.4 397 30.2
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 6.2e-28 129.0 357 30.0
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 8.2e-28 128.6 143 46.2
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 8.2e-28 128.6 295 34.9
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 5.3e-27 125.9 376 31.1
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.3e-27 125.9 358 31.0
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.0e-26 124.0 365 29.9
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.0e-26 124.0 436 29.1
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 5.8e-26 122.5 323 29.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 7.6e-26 122.1 201 39.3
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-25 121.3 316 30.1
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-25 120.9 323 30.0
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 1.7e-25 120.9 320 31.9
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 3.8e-25 119.8 454 28.4
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 4.9e-25 119.4 230 34.3
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.9e-25 119.4 439 27.1
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 3.2e-24 116.7 368 28.3
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-24 116.3 356 30.9
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 5.5e-24 115.9 282 33.0
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 9.3e-24 115.2 326 30.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-23 114.8 261 32.6
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.6e-23 114.4 325 30.5
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.6e-23 114.4 168 39.9
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.1e-23 114.0 329 28.6
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 4.6e-23 112.8 437 26.8
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 4.6e-23 112.8 177 34.5
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.0e-22 110.2 364 29.4
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-21 107.8 324 29.9
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 3.3e-21 106.7 177 35.6
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 3.3e-21 106.7 177 35.6
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.7e-21 105.9 328 28.4
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.4e-21 105.5 335 29.0
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 9.7e-21 105.1 332 28.9
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.6e-20 104.4 261 30.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 2.8e-20 103.6 307 26.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.8e-20 103.6 349 28.9
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 6.3e-20 102.4 172 32.6
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.4e-19 101.3 299 30.8
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.8e-19 100.9 177 35.6
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.4e-19 100.5 352 29.5
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.1e-19 100.1 328 28.7
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 3.1e-19 100.1 161 39.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 4.1e-19 99.8 177 35.0
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.1e-19 99.8 329 27.1
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 9.0e-19 98.6 170 35.3
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 9.0e-19 98.6 227 31.7
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 9.0e-19 98.6 227 31.7
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.2e-18 98.2 294 31.6
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.5e-18 97.8 326 27.3
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 2.0e-18 97.4 326 28.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 5.9e-18 95.9 297 30.3
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 5.9e-18 95.9 297 30.3
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.7e-17 94.4 322 28.3
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.1e-16 91.7 463 26.1
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-16 90.5 152 36.2
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.5e-16 90.5 186 33.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 9.4e-16 88.6 327 29.1
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-15 87.4 325 28.3
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.7e-15 87.0 336 26.2
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 4.6e-15 86.3 371 27.8
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 4.6e-15 86.3 286 28.7
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 7.9e-15 85.5 135 37.0
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.0e-14 85.1 325 27.1
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.0e-14 85.1 282 27.7
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.8e-14 84.3 350 26.9
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 3.0e-14 83.6 326 27.6
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 6.7e-14 82.4 271 28.0
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 6.7e-14 82.4 271 28.0
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.3e-13 79.7 97 42.3
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.4e-13 79.0 104 42.3
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 9.7e-13 78.6 144 38.2
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.3e-12 78.2 204 31.4
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 5.3e-11 72.8 258 27.1
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 2.6e-10 70.5 181 29.3
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 2.2e-09 67.4 109 35.8
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 6.5e-09 65.9 262 26.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 2.5e-08 63.9 138 29.7
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 2.5e-08 63.9 115 33.9
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 5.5e-08 62.8 165 26.1
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.6e-07 60.1 264 26.5
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 6.1e-07 59.3 114 31.6
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 7.9e-07 58.9 118 29.7
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.3e-06 57.4 247 24.7
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-06 57.4 218 28.4


User provided reference genes

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