Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold101G29763 Striga asiatica HOM05D030770 ORTHO05D403953 4.8e-34 147.9 116 100.0
SGA_v2.0_scaffold21G09430 Striga asiatica HOM05D030770 ORTHO05D399267 2.0e-19 99.4 116 77.6
SGA_v2.0_scaffold230G43384 Striga asiatica HOM05D030770 ORTHO05D400338 3.4e-19 98.6 64 82.8
SGA_v2.0_scaffold24G10597 Striga asiatica HOM05D000672 ORTHO05D000522 1.7e-15 86.3 62 77.4
SGA_v2.0_scaffold348G49584 Striga asiatica HOM05D030770 ORTHO05D401139 8.0e-13 77.4 64 67.2
SGA_v2.0_scaffold118G32550 Striga asiatica HOM05D000672 ORTHO05D000522 1.4e-12 76.6 62 66.1
SalBow7G3791 Salvia bowleyana HOM05D000672 ORTHO05D000522 7.5e-11 70.9 53 62.3
MSTRG.1564 Avicennia marina HOM05D000672 ORTHO05D000522 9.8e-11 70.5 58 60.3
Oeu017749.1 Olea europaea HOM05D000672 ORTHO05D000522 9.8e-11 70.5 61 62.3
ECA247G2298 Erigeron canadensis HOM05D000672 ORTHO05D000522 1.7e-10 69.7 59 67.8
Oeu044955.1 Olea europaea HOM05D000672 ORTHO05D000522 2.2e-10 69.3 68 60.3
Migut.N03370 Erythranthe guttata HOM05D000672 ORTHO05D000522 4.8e-10 68.2 62 62.9
Dinv41756 Davidia involucrata HOM05D000672 ORTHO05D000522 1.4e-09 66.6 63 60.3
Rhsim12G0006200 Rhododendron simsii HOM05D000672 ORTHO05D000522 1.8e-09 66.2 47 70.2
SGA_v2.0_scaffold19G08939 Striga asiatica HOM05D000672 ORTHO05D000522 5.4e-09 64.7 60 58.3
Ca_19687_v3 Cicer arietinum L. HOM05D000672 ORTHO05D000522 7.0e-09 64.3 53 62.3
Gohir.D13G123100 Gossypium hirsutum HOM05D000672 ORTHO05D000522 7.0e-09 64.3 49 65.3
Gorai.013G138100 Gossypium raimondii HOM05D000672 ORTHO05D000522 7.0e-09 64.3 49 65.3
Actinidia23034 Actinidia chinensis HOM05D000672 ORTHO05D000522 9.1e-09 63.9 63 54.0
Oeu013895.1 Olea europaea HOM05D000672 ORTHO05D000522 1.2e-08 63.5 69 53.6
Sabra13G0091700 Salix brachista HOM05D000672 ORTHO05D000522 1.2e-08 63.5 64 54.7
Cc10_g09690 Coffea canephora HOM05D000672 ORTHO05D000522 1.6e-08 63.2 62 56.5
Duzib177G0856 Durio zibethinus HOM05D000672 ORTHO05D000522 1.6e-08 63.2 48 66.7
Migut.C01317 Erythranthe guttata HOM05D000672 ORTHO05D000522 1.6e-08 63.2 63 54.0
Gohir.A13G119300 Gossypium hirsutum HOM05D000672 ORTHO05D000522 1.6e-08 63.2 49 63.3
vmacro00979 Vaccinium macrocarpon HOM05D000672 ORTHO05D000522 1.6e-08 63.2 57 61.4
MSTRG.25472 Avicennia marina HOM05D000672 ORTHO05D000522 2.0e-08 62.8 43 69.8
CSS0042135 Camellia sinensis var. sinensis HOM05D000672 ORTHO05D000522 2.0e-08 62.8 49 65.3
Potri.013G106000 Populus trichocarpa HOM05D000672 ORTHO05D000522 2.0e-08 62.8 63 54.0
TWI14G1379 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 4.5e-08 61.6 63 54.0
Lsat_1_v5_gn_1_26001 Lactuca sativa HOM05D000672 ORTHO05D000522 5.9e-08 61.2 61 57.4
Potri.019G079500 Populus trichocarpa HOM05D000672 ORTHO05D000522 7.7e-08 60.8 62 54.8
Gohir.D05G274900 Gossypium hirsutum HOM05D000672 ORTHO05D000522 1.0e-07 60.5 47 66.0
Gorai.009G288200 Gossypium raimondii HOM05D000672 ORTHO05D000522 1.0e-07 60.5 47 66.0
HanXRQChr04g0101781 Helianthus annuus HOM05D000672 ORTHO05D000522 1.0e-07 60.5 63 52.4
Lj7A621T37 Lonicera japonica HOM05D000672 ORTHO05D000522 1.0e-07 60.5 45 66.7
TWI59G1461 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 1.0e-07 60.5 57 56.1
TAR381G1592 Trochodendron aralioides HOM05D000672 ORTHO05D000522 1.0e-07 60.5 57 57.9
HanXRQChr13g0402351 Helianthus annuus HOM05D000672 ORTHO05D000522 1.7e-07 59.7 63 55.6
Medtr4g033435 Medicago truncatula HOM05D000672 ORTHO05D000522 1.7e-07 59.7 67 56.7
Cpa.g.c37837 Carica papaya HOM05D000672 ORTHO05D000522 2.3e-07 59.3 45 66.7
Manes.18G105400 Manihot esculenta HOM05D000672 ORTHO05D000522 2.3e-07 59.3 63 50.8
COL.COLO4_24657 Corchorus olitorius HOM05D000672 ORTHO05D000522 2.9e-07 58.9 48 62.5
HanXRQChr02g0036611 Helianthus annuus HOM05D000672 ORTHO05D000522 2.9e-07 58.9 60 56.7
Manes.02G198300 Manihot esculenta HOM05D000672 ORTHO05D000522 2.9e-07 58.9 64 53.1
Gohir.A05G272700 Gossypium hirsutum HOM05D000672 ORTHO05D000522 3.8e-07 58.5 61 55.7
Sabra19G0090000 Salix brachista HOM05D000672 ORTHO05D000522 3.8e-07 58.5 63 52.4
unitig_0.g2056 Utricularia gibba HOM05D000672 ORTHO05D000522 5.0e-07 58.2 53 54.7
CiPaw.07G236000 Carya illinoinensis HOM05D000672 ORTHO05D000522 6.6e-07 57.8 61 55.7
PGSC0003DMG400005189 Solanum tuberosum HOM05D000672 ORTHO05D000522 6.6e-07 57.8 57 56.1
Thecc.08G191800 Theobroma cacao HOM05D000672 ORTHO05D000522 6.6e-07 57.8 59 57.6
TWI23G0615 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 6.6e-07 57.8 63 50.8
Ciclev10000682m.g Citrus clementina HOM05D000672 ORTHO05D000522 8.6e-07 57.4 63 54.0
MBI09_g05948_MAGBIO Magnolia biondii HOM05D000672 ORTHO05D000522 8.6e-07 57.4 55 52.7
Solyc06g064940.3 Solanum lycopersicum HOM05D000672 ORTHO05D000522 8.6e-07 57.4 57 56.1
Sopen06g023460 Solanum pennellii HOM05D000672 ORTHO05D000522 8.6e-07 57.4 57 56.1
SGA_v2.0_scaffold24G10600 Striga asiatica HOM05D000672 ORTHO05D000522 8.6e-07 57.4 37 73.0
EL10Ac1g00133 Beta vulgaris HOM05D000672 ORTHO05D000522 1.1e-06 57.0 61 55.7
MD15G1406000 Malus domestica HOM05D000672 ORTHO05D000522 1.1e-06 57.0 56 57.1
PSO170G5386 Papaver somniferum HOM05D000672 ORTHO05D000522 1.1e-06 57.0 57 54.4
Lj3g0025463 Lotus japonicus HOM05D000672 ORTHO05D000522 1.9e-06 56.2 45 62.2
PSO782G4525 Papaver somniferum HOM05D000672 ORTHO05D000522 1.9e-06 56.2 63 52.4
VMungo1127G0350 Vigna mungo HOM05D000672 ORTHO05D000522 1.9e-06 56.2 47 61.7
CAN.G308.32 Capsicum annuum HOM05D000672 ORTHO05D000522 2.5e-06 55.8 57 54.4
Nitab4.5_0005558g0010 Nicotiana tabacum HOM05D000672 ORTHO05D000522 2.5e-06 55.8 66 53.0
FvH4_5g31750 Fragaria vesca HOM05D000672 ORTHO05D000522 3.3e-06 55.5 44 61.4
FAN18G3464 Fragaria x ananassa HOM05D000672 ORTHO05D000522 3.3e-06 55.5 44 61.4
Nitab4.5_0001463g0010 Nicotiana tabacum HOM05D000672 ORTHO05D000522 3.3e-06 55.5 44 59.1
Nitab4.5_0004698g0050 Nicotiana tabacum HOM05D000672 ORTHO05D000522 3.3e-06 55.5 44 59.1
TAR624G0504 Trochodendron aralioides HOM05D000672 ORTHO05D000522 3.3e-06 55.5 47 57.4
CsaV3_5G040530 Cucumis sativus L. HOM05D000672 ORTHO05D000522 4.2e-06 55.1 65 50.8
MD08G1218200 Malus domestica HOM05D000672 ORTHO05D000522 4.2e-06 55.1 58 56.9
Psat7g146080 Pisum sativum HOM05D000672 ORTHO05D000522 4.2e-06 55.1 62 54.8
Glyma.12G001800 Glycine max HOM05D000672 ORTHO05D000522 5.5e-06 54.7 63 50.8
MBI17_g01792_MAGBIO Magnolia biondii HOM05D000672 ORTHO05D000522 5.5e-06 54.7 47 59.6
Peaxi162Scf00688g00431 Petunia axillaris HOM05D000672 ORTHO05D000522 5.5e-06 54.7 44 59.1
Peaxi162Scf01231g00214 Petunia axillaris HOM05D000672 ORTHO05D000522 7.2e-06 54.3 60 51.7
Sc23g0001490 Simmondsia chinensis HOM05D000672 ORTHO05D000522 7.2e-06 54.3 62 48.4
Aqoxy5G02650 Aquilegia oxysepala HOM05D000672 ORTHO05D000522 9.5e-06 53.9 44 59.1
Nitab4.5_0004970g0020 Nicotiana tabacum HOM05D000672 ORTHO05D000522 9.5e-06 53.9 62 53.2


User provided reference genes

Program Settings