Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 2.6e-69 265.4 144 100.0
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 7.8e-26 120.9 154 55.2
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 1.5e-24 116.7 145 53.8
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 3.3e-24 115.5 156 51.9
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 3.6e-23 112.1 146 52.7
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 3.6e-23 112.1 133 57.1
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 8.1e-23 110.9 145 52.4
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.8e-22 109.8 159 52.2
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 3.1e-22 109.0 159 47.2
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 3.1e-22 109.0 153 52.3
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 4.0e-22 108.6 145 51.0
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 4.0e-22 108.6 133 54.9
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 1.2e-21 107.1 149 53.7
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 1.5e-21 106.7 158 50.6
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 2.6e-21 105.9 150 52.7
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 3.4e-21 105.5 156 48.1
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 4.4e-21 105.1 153 49.7
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 9.9e-21 104.0 156 47.4
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 1.7e-20 103.2 169 42.6
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 2.9e-20 102.4 153 47.7
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 3.8e-20 102.1 142 47.2
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 6.4e-20 101.3 163 47.9
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 8.4e-20 100.9 153 51.0
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 1.1e-19 100.5 131 54.2
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.4e-19 100.1 145 45.5
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 1.4e-19 100.1 145 50.3
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.9e-19 99.8 148 48.6
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 3.2e-19 99.0 132 53.8
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 1.2e-18 97.1 150 48.0
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 1.6e-18 96.7 100 61.0
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 4.6e-18 95.1 111 55.9
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 7.8e-18 94.4 139 49.6
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 7.8e-18 94.4 134 45.5
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 1.0e-17 94.0 157 47.8
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 1.0e-17 94.0 161 49.1
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.7e-17 93.2 157 47.8
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.3e-17 92.8 155 49.0
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 3.0e-17 92.4 143 44.1
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 3.9e-17 92.0 158 46.8
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 3.9e-17 92.0 150 47.3
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.9e-17 92.0 145 49.0
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 3.9e-17 92.0 135 48.9
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 5.1e-17 91.7 158 41.8
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 6.6e-17 91.3 150 48.7
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 6.6e-17 91.3 162 40.1
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 8.7e-17 90.9 161 47.8
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 8.7e-17 90.9 150 50.0
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 8.7e-17 90.9 156 46.2
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 1.1e-16 90.5 150 39.3
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.5e-16 90.1 155 42.6
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 2.5e-16 89.4 157 46.5
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.5e-16 89.4 157 43.3
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 4.3e-16 88.6 143 48.3
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 4.3e-16 88.6 142 48.6
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 5.6e-16 88.2 146 45.9
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 5.6e-16 88.2 105 55.2
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 7.3e-16 87.8 98 58.2
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 7.3e-16 87.8 89 61.8
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 7.3e-16 87.8 151 42.4
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 1.3e-15 87.0 153 49.0
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.3e-15 87.0 152 44.7
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 2.1e-15 86.3 141 39.0
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 2.8e-15 85.9 95 62.1
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 8.1e-15 84.3 156 45.5
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 8.1e-15 84.3 156 45.5
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 8.1e-15 84.3 151 41.1
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 1.1e-14 84.0 142 47.9
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 2.4e-14 82.8 144 46.5
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.1e-14 82.4 89 60.7
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 3.1e-14 82.4 105 54.3
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 3.1e-14 82.4 160 36.2
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 5.3e-14 81.6 62 71.0
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 1.2e-13 80.5 155 43.2
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.5e-13 80.1 143 42.7
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 1.5e-13 80.1 76 63.2
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 1.5e-13 80.1 76 63.2
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 2.0e-13 79.7 155 43.2
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 2.0e-13 79.7 60 71.7
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.0e-13 79.7 60 71.7
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.0e-13 79.7 60 71.7
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 2.6e-13 79.3 158 43.7
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 2.6e-13 79.3 147 46.9
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 2.6e-13 79.3 78 53.8
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 3.4e-13 79.0 155 43.2
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 3.4e-13 79.0 155 43.2
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 3.4e-13 79.0 155 43.2
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 4.5e-13 78.6 142 47.2
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 5.8e-13 78.2 143 46.2
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 5.8e-13 78.2 156 42.3
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.7e-12 76.6 91 57.1
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.7e-12 76.6 151 43.7
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.7e-12 76.6 153 35.3
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 2.2e-12 76.3 150 46.0
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 2.9e-12 75.9 106 51.9
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 3.8e-12 75.5 147 41.5
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 6.4e-12 74.7 76 50.0
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 6.4e-12 74.7 62 69.4
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 6.4e-12 74.7 79 57.0
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 8.4e-12 74.3 140 43.6
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 8.4e-12 74.3 158 46.2
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.1e-11 73.9 140 40.0
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 1.1e-11 73.9 170 40.6
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 1.4e-11 73.6 160 44.4
MBI02_g23716_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 1.9e-11 73.2 114 43.0
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 2.4e-11 72.8 155 43.9
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 3.2e-11 72.4 156 41.7
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 5.4e-11 71.6 71 50.7
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 7.1e-11 71.2 145 36.6
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 9.3e-11 70.9 160 39.4
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 9.3e-11 70.9 157 40.8
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 9.3e-11 70.9 59 66.1
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 2.1e-10 69.7 155 40.0
Os07g0123900 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 2.7e-10 69.3 86 50.0
Lalb_Chr18g0059871 Lupinus albus HOM05D004792 ORTHO05D005789 3.5e-10 68.9 130 40.0
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 4.6e-10 68.6 76 53.9
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 7.9e-10 67.8 58 62.1
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.0e-09 67.4 120 48.3
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 1.0e-09 67.4 88 48.9
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 1.3e-09 67.0 100 50.0
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 1.3e-09 67.0 109 46.8
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 1.3e-09 67.0 109 46.8
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 1.8e-09 66.6 99 49.5
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 2.3e-09 66.2 115 48.7
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 2.3e-09 66.2 115 48.7
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 3.0e-09 65.9 123 42.3
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 3.9e-09 65.5 147 38.8
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 3.9e-09 65.5 115 47.8
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 5.1e-09 65.1 103 49.5
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 5.1e-09 65.1 76 48.7
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 6.7e-09 64.7 115 46.1
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 6.7e-09 64.7 115 46.1
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 6.7e-09 64.7 142 43.0
unitig_749.g13788 Utricularia gibba HOM05D000041 ORTHO05D008933 6.7e-09 64.7 122 41.8
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 1.1e-08 63.9 143 38.5
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 1.1e-08 63.9 115 46.1
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 1.5e-08 63.5 144 43.1
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 1.5e-08 63.5 144 43.1
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 1.5e-08 63.5 144 43.1
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 1.9e-08 63.2 138 44.9
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 2.5e-08 62.8 144 43.1
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 2.5e-08 62.8 153 34.6
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 5.6e-08 61.6 144 41.0
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 5.6e-08 61.6 141 39.0
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 9.6e-08 60.8 138 43.5
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 2.1e-07 59.7 60 58.3
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 1.1e-06 57.4 144 38.2
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 1.4e-06 57.0 144 40.3
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 2.4e-06 56.2 147 35.4


User provided reference genes

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