Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 8.2e-76 287.0 144 100.0
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 4.3e-16 88.6 307 30.0
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 3.5e-10 68.9 36 86.1
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 2.3e-09 66.2 36 83.3
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 2.3e-09 66.2 36 83.3
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 2.3e-09 66.2 36 83.3
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 2.3e-09 66.2 36 83.3
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 6.7e-09 64.7 35 82.9
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 6.7e-09 64.7 35 82.9
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 8.7e-09 64.3 35 80.0
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 8.7e-09 64.3 35 80.0
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 1.9e-08 63.2 34 85.3
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 1.9e-08 63.2 35 77.1
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.9e-08 63.2 35 77.1
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.9e-08 63.2 35 77.1
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.9e-08 63.2 35 77.1
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.9e-08 63.2 35 77.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 1.9e-08 63.2 35 77.1
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 3.3e-08 62.4 36 75.0
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 4.3e-08 62.0 35 80.0
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 4.3e-08 62.0 35 80.0
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 4.3e-08 62.0 35 80.0
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 4.3e-08 62.0 35 77.1
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 5.6e-08 61.6 35 77.1
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 9.6e-08 60.8 35 80.0
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 9.6e-08 60.8 35 80.0
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 1.3e-07 60.5 35 77.1
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 1.3e-07 60.5 35 80.0
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.6e-07 60.1 35 74.3
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 1.6e-07 60.1 35 74.3
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 1.6e-07 60.1 35 74.3
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.1e-07 59.7 35 77.1
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 2.1e-07 59.7 35 71.4
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.1e-07 59.7 36 72.2
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 2.8e-07 59.3 35 77.1
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 3.7e-07 58.9 35 77.1
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 3.7e-07 58.9 35 74.3
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 4.8e-07 58.5 35 77.1
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 6.2e-07 58.2 35 77.1
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 6.2e-07 58.2 35 74.3
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 6.2e-07 58.2 35 74.3
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 1.1e-06 57.4 35 71.4
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 1.4e-06 57.0 35 74.3
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 68.6
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 68.6
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 68.6
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 71.4
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 71.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 68.6
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 1.8e-06 56.6 35 71.4
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 2.4e-06 56.2 35 71.4
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 3.1e-06 55.8 35 74.3
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 3.1e-06 55.8 35 74.3
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 3.1e-06 55.8 35 68.6
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 3.1e-06 55.8 36 69.4
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 4.0e-06 55.5 35 68.6
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.3e-06 55.1 36 69.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 5.3e-06 55.1 38 71.1
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 5.3e-06 55.1 36 69.4
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 6.9e-06 54.7 35 62.9
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 6.9e-06 54.7 35 68.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 6.9e-06 54.7 34 70.6
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 9.0e-06 54.3 35 71.4
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 9.0e-06 54.3 35 74.3
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 9.0e-06 54.3 35 65.7
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 9.0e-06 54.3 35 71.4


User provided reference genes

Program Settings