Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold100G29573 Striga asiatica HOM05D065015 ORTHO05D051403 1.4e-110 402.9 201 100.0
SGA_v2.0_scaffold40G15430 Striga asiatica HOM05D000033 ORTHO05D006081 2.7e-32 142.9 171 52.6
A03p20190 Brassica napus HOM05D000033 ORTHO05D006081 6.0e-16 88.6 165 35.2
HanXRQChr01g0028411 Helianthus annuus HOM05D000033 ORTHO05D006081 6.9e-12 75.1 171 35.1
Ca_11612_v3 Cicer arietinum L. HOM05D000033 ORTHO05D006081 5.8e-11 72.0 117 39.3
BcaB01g03827 Brassica carinata HOM05D000033 ORTHO05D006081 1.7e-10 70.5 203 31.0
Oeu018706.1 Olea europaea HOM05D000033 ORTHO05D006081 2.9e-10 69.7 98 46.9
MSTRG.10341 Avicennia marina HOM05D000033 ORTHO05D006081 6.4e-10 68.6 225 28.9
Aa31LG5G18720 Aethionema arabicum HOM05D000033 ORTHO05D000913 1.2e-08 64.3 157 38.2
THA.LOC104827490 Tarenaya hassleriana HOM05D000033 ORTHO05D006081 1.2e-08 64.3 170 31.2
Cc06_g05040 Coffea canephora HOM05D000033 ORTHO05D006081 2.1e-08 63.5 100 42.0
Oeu040554.1 Olea europaea HOM05D000033 ORTHO05D006081 2.3e-07 60.1 94 41.5
BcaB01g03826 Brassica carinata HOM05D000033 ORTHO05D006081 3.0e-07 59.7 116 33.6
BcaC01g05649 Brassica carinata HOM05D000033 ORTHO05D006081 3.0e-07 59.7 223 27.8
BcaC01g05650 Brassica carinata HOM05D000033 ORTHO05D006081 3.0e-07 59.7 223 27.8
C03p23670 Brassica napus HOM05D000033 ORTHO05D006081 3.0e-07 59.7 223 27.8
BolC3t14762H Brassica oleracea HOM05D000033 ORTHO05D006081 3.0e-07 59.7 223 27.8
Carub.0008s0572 Capsella rubella HOM05D000033 ORTHO05D003265 3.9e-07 59.3 165 30.9
BraA03t11270Z Brassica rapa HOM05D000033 ORTHO05D006081 1.1e-06 57.8 224 27.2
MBI05_g34466_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D010114 1.1e-06 57.8 175 31.4
Rhsim03G0083200 Rhododendron simsii HOM05D000033 ORTHO05D006081 1.1e-06 57.8 99 39.4
Sc11g0003570 Simmondsia chinensis HOM05D000033 ORTHO05D004067 1.5e-06 57.4 177 32.2
vmacro17923 Vaccinium macrocarpon HOM05D000033 ORTHO05D010048 1.5e-06 57.4 177 32.8
Solyc02g093100.3 Solanum lycopersicum HOM05D000033 ORTHO05D003265 2.5e-06 56.6 172 30.8
ECA240G2696 Erigeron canadensis HOM05D000033 ORTHO05D010114 3.3e-06 56.2 82 42.7
Thhalv10016353m.g Eutrema salsugineum HOM05D000033 ORTHO05D006081 4.3e-06 55.8 219 27.9
MD01G1212600 Malus domestica HOM05D000071 ORTHO05D000029 4.3e-06 55.8 95 34.7
CsaV3_4G009350 Cucumis sativus L. HOM05D000033 ORTHO05D010114 5.6e-06 55.5 82 40.2
Lsat_1_v5_gn_1_50660 Lactuca sativa HOM05D000033 ORTHO05D006081 5.6e-06 55.5 89 40.4
SGA_v2.0_scaffold34G13582 Striga asiatica HOM05D065015 ORTHO05D051403 5.6e-06 55.5 40 77.5
Lj3A1005T43 Lonicera japonica HOM05D000033 ORTHO05D006081 7.4e-06 55.1 95 37.9
Nn2g10644 Nelumbo nucifera HOM05D000033 ORTHO05D006081 7.4e-06 55.1 107 37.4
PGR042G0676 Punica granatum HOM05D000033 ORTHO05D010114 7.4e-06 55.1 133 33.8
Cc04_g01090 Coffea canephora HOM05D000033 ORTHO05D002890 9.6e-06 54.7 81 42.0


User provided reference genes

Program Settings