Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 2197.9 1100 100.0
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1857.4 1098 84.0
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1838.2 1101 82.7
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1746.5 1166 76.4
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1740.3 1115 77.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1719.1 1089 78.7
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1711.4 1087 78.5
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1686.8 1092 75.7
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1090 75.0
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1680.6 1091 75.6
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1090 75.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1090 75.0
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1670.6 1103 74.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1668.7 1090 74.6
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1091 74.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1090 74.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1662.9 1090 74.5
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1117 71.4
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1630.5 1098 71.9
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1630.2 1091 72.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1089 72.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1628.2 1091 72.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1627.1 1091 72.8
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1624.4 1097 72.0
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1620.5 1098 72.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1101 71.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1090 72.5
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1089 72.3
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1601.3 1098 71.8
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1095 71.1
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1095 71.1
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1088 71.3
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1587.8 1095 70.7
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1088 71.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1095 70.7
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1097 70.5
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1579.7 1096 70.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1097 69.6
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1089 71.1
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1097 70.6
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1097 69.9
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1102 70.1
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1098 69.1
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1097 70.6
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1096 70.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1101 70.5
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1090 69.3
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1093 70.2
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1097 68.8
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1564.7 1097 69.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1102 70.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1097 68.8
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1095 69.8
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1095 69.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1097 69.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 1111 68.8
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1560.0 1097 68.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1116 68.7
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1088 70.7
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1108 69.9
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1095 69.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1106 68.8
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1550.0 1093 68.7
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1110 69.8
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1095 69.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1541.6 1176 65.5
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1541.6 1100 69.6
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1096 68.2
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1096 68.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1097 70.2
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1098 69.9
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1098 69.7
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1537.3 1100 69.7
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1091 68.3
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1535.0 1098 69.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1176 65.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1098 69.5
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1098 69.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1528.8 1098 69.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1524.6 1107 68.1
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1513.4 1087 68.6
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1090 68.3
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 1088 68.2
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1090 69.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1510.7 1090 68.3
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1007 72.4
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1507.7 1088 67.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1507.7 1088 67.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1505.0 1094 67.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1504.2 1096 67.7
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1503.4 1095 67.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1501.9 1090 67.5
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1501.5 1090 67.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1501.1 1090 67.4
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1501.1 1090 67.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1090 67.4
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1090 67.2
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1498.8 1025 70.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1090 67.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1489.9 1092 66.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1488.8 1083 67.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1474.1 1103 65.0
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1467.2 1117 64.7
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1467.2 1064 67.2
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1467.2 1087 66.0
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1432.2 1109 63.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1427.9 1098 65.7
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1427.5 982 71.0
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1416.0 1014 69.2
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1336.6 1017 65.9
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1317.0 1091 62.2
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1202.2 792 75.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1169.8 1099 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 1102 52.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1152.1 691 81.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 1141 51.1
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 1092 51.7
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1121.7 723 75.5
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1117.4 1090 51.0
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1109.0 673 79.6
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1094.7 765 70.3
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.6e-294 1015.8 846 59.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.4e-276 954.9 508 92.1
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.7e-267 926.0 818 57.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.0e-262 909.8 614 75.1
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 4.1e-252 875.5 597 77.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 7.3e-249 864.8 964 48.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 9.9e-246 854.4 630 70.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-216 757.3 643 57.9
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 5.9e-214 748.8 981 44.3
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.4e-167 592.8 429 69.7
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 6.4e-152 542.7 305 84.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.3e-132 476.1 313 74.1
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 5.4e-119 433.3 393 56.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.4e-74 285.0 302 50.3
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.4e-66 259.2 255 52.5
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.2e-63 248.1 205 59.0
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.2e-62 246.1 132 83.3
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.3e-48 199.5 139 66.2
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.9e-35 155.2 157 51.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 3.5e-33 148.3 160 51.2
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 2.1e-30 139.0 156 48.1
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 4.7e-30 137.9 72 87.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.6e-25 122.9 107 53.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.3e-24 119.8 97 61.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.5e-23 115.5 101 59.4
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 6.9e-13 80.9 49 71.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.5e-12 79.7 67 50.7
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.7e-11 76.3 142 36.6
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 3.8e-11 75.1 47 76.6
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 6.0e-09 67.8 33 90.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 39 74.4


User provided reference genes

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