Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 3081.2 1557 100.0
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1478.4 1256 66.9
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1418.7 1262 64.3
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1385.2 1268 63.2
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1350.9 1258 61.8
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1337.4 1263 60.5
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1318.1 1263 60.2
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1311.6 1271 59.4
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1298.1 1257 58.9
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1297.7 1258 58.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1297.7 1262 59.3
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1297.3 1262 59.3
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1297.0 1316 58.0
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1293.9 1263 59.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1290.8 1249 59.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1286.9 1263 59.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1283.1 1249 59.2
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1279.6 1263 59.1
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1271.9 1263 57.9
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1268.4 1257 58.8
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1264.6 1263 58.2
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1264.2 1255 58.6
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1263.1 1263 58.1
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1259.6 1263 57.4
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1254.2 1263 57.7
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1253.8 1265 57.9
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1253.4 1262 57.4
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1248.4 1261 57.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1243.0 1261 57.9
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1238.4 1260 56.7
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1237.6 1257 57.0
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1234.2 1260 56.3
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1231.1 1260 57.4
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1230.7 1263 56.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1230.3 1254 56.5
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1229.5 1269 56.5
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1228.4 1259 56.6
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1226.1 1268 57.0
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1226.1 1259 56.6
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1225.7 1263 56.4
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1222.6 1266 56.2
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1219.9 1259 56.0
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1219.5 1229 57.9
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1218.0 1255 56.2
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1216.1 1234 57.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1209.9 1257 56.4
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1208.0 1266 56.8
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1208.0 1253 56.2
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1207.6 1261 56.3
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1207.2 1254 56.1
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1205.3 1255 55.9
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1204.1 1263 55.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1196.0 1130 60.6
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1187.2 1268 55.9
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1182.9 1257 56.2
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1179.1 1257 56.0
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1176.0 1212 56.4
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1174.1 1257 55.8
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1157.9 1257 54.8
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1154.4 1180 56.9
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1152.9 1253 54.6
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1151.3 1328 52.9
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1148.7 1224 55.6
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1142.5 1245 55.1
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1137.9 1253 53.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1136.7 1221 55.0
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1129.4 1250 53.1
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1127.1 1254 53.5
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1126.7 1253 53.9
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1126.3 1220 54.8
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1122.5 1256 52.8
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1119.4 1250 53.0
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1115.5 1207 54.3
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1113.2 1261 52.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1112.8 1247 54.5
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1110.5 1261 52.3
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1109.0 1250 52.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1104.4 1256 53.1
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1102.8 1250 52.4
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1101.7 1280 51.6
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1100.1 1185 54.3
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1099.7 1261 51.8
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1095.9 1239 53.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1092.4 1255 51.8
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1092.4 1281 51.1
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1090.5 1257 51.9
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1088.2 1261 51.9
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1087.8 1250 53.3
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1080.9 1260 51.3
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1078.5 1273 52.5
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1077.0 1251 51.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 1.4e-309 1067.0 1259 50.8
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 4.4e-308 1062.0 1236 51.5
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 7.1e-306 1054.7 1258 50.5
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 9.2e-306 1054.3 1262 52.0
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 5.2e-301 1038.5 1241 51.6
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 2.2e-299 1033.1 1256 50.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 5.4e-298 1028.5 1274 49.4
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.6e-297 1026.9 1224 50.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.9e-296 1022.3 1191 52.0
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 8.1e-294 1014.6 1260 48.1
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 1.2e-292 1010.7 1256 48.2
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 2.2e-291 1006.5 1335 49.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.1e-287 994.2 1259 48.6
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.3e-272 944.1 864 61.7
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.3e-270 937.6 963 55.6
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 1.3e-264 917.5 996 54.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.2e-246 857.1 965 53.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.4e-242 844.3 834 58.4
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 6.3e-238 828.9 1013 51.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.2e-228 798.1 1272 41.1
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.4e-223 780.0 1274 40.3
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 7.3e-202 709.1 891 50.8
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 8.9e-200 702.2 1264 38.1
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.3e-198 698.4 694 59.7
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 8.3e-190 669.1 690 56.4
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.7e-187 661.4 684 57.2
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 8.6e-187 659.1 823 50.9
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.1e-186 658.7 1263 36.5
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.2e-183 648.7 710 53.9
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.3e-182 645.2 1254 35.7
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.1e-181 640.2 691 53.4
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.1e-173 612.8 971 42.5
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.9e-171 607.1 699 51.9
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 2.6e-159 567.8 561 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.3e-146 524.2 860 40.2
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.2e-145 521.5 538 58.4
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.9e-138 498.4 1363 29.9
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.5e-138 498.0 519 56.3
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 3.9e-123 447.6 377 64.5
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.3e-120 437.2 498 52.4
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.3e-113 416.0 381 61.2
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.0e-107 394.8 354 61.3
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 3.5e-103 381.3 366 58.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.9e-101 375.6 366 59.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.5e-101 375.2 474 49.4
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.8e-92 345.1 365 56.2
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 4.0e-91 341.3 298 64.1
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.5e-90 339.3 327 58.1
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.3e-75 288.9 228 68.0
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.2e-65 255.8 413 41.2
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 2.1e-55 222.6 130 82.3
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 3.5e-55 221.9 131 81.7
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.3e-52 213.4 130 79.2
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 3.6e-52 211.8 136 77.9
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.9e-49 201.4 129 75.2
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.1e-48 200.3 162 66.0
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 5.6e-37 161.4 115 66.1
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 8.4e-33 147.5 264 39.4
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.5e-32 144.8 85 83.5
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.2e-31 143.7 97 75.3
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.7e-31 142.5 180 47.8
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.7e-31 142.5 178 48.3
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 3.3e-29 135.6 71 88.7
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 7.4e-29 134.4 104 61.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.6e-28 133.3 86 73.3
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.4e-27 130.2 90 73.3
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-27 128.3 133 50.4
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 2.2e-25 122.9 72 79.2
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.9e-25 122.5 73 78.1
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.5e-25 120.9 72 76.4
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.6e-23 116.7 103 60.2
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 7.9e-23 114.4 81 67.9
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 7.7e-18 97.8 100 55.0
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.8e-17 95.5 127 38.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.0e-14 87.4 71 62.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 2.0e-13 83.2 84 52.4
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 2.0e-13 83.2 84 52.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-13 82.0 75 60.0
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 6.3e-12 78.2 54 77.8
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 1.8e-11 76.6 56 66.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.7e-09 70.1 53 69.8
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 2.2e-09 69.7 48 70.8
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.5e-08 67.0 41 78.0
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 2.7e-07 62.8 43 67.4
Psat4g104800 Pisum sativum HOM05D003122 ORTHO05D000002 3.0e-06 59.3 54 46.3
Psat3g057600 Pisum sativum HOM05D003122 ORTHO05D000002 8.8e-06 57.8 54 46.3


User provided reference genes

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