Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.9e-71 272.3 132 100.0
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 2.2e-51 205.7 121 79.3
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.9e-51 204.5 122 76.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.4e-51 204.1 120 80.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 8.4e-51 203.8 121 78.5
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 7.1e-50 200.7 131 71.0
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.8e-48 196.1 122 76.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.3e-48 195.7 120 77.5
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.3e-48 195.7 119 74.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 3.9e-48 194.9 120 77.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 5.1e-48 194.5 120 75.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.1e-48 194.5 128 71.9
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 5.1e-48 194.5 120 76.7
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.7e-48 194.1 125 73.6
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 6.7e-48 194.1 125 72.8
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 6.7e-48 194.1 125 74.4
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.1e-47 193.4 120 75.8
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.5e-47 193.0 120 75.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.5e-47 193.0 120 76.7
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.5e-47 193.0 120 75.0
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.5e-47 193.0 120 74.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.5e-47 193.0 129 71.3
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.5e-47 193.0 129 71.3
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.5e-47 193.0 120 75.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 2.5e-47 192.2 129 72.1
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.5e-47 192.2 120 75.8
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.5e-47 192.2 131 71.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.5e-47 192.2 126 69.0
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.3e-47 191.8 124 72.6
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.3e-47 191.8 125 72.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.3e-47 191.8 120 74.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.3e-47 191.8 120 75.8
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.3e-47 191.8 120 75.8
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 3.3e-47 191.8 119 74.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.3e-47 191.8 120 74.2
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 3.3e-47 191.8 120 74.2
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.3e-47 191.4 126 71.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.3e-47 191.4 116 75.9
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 5.6e-47 191.0 126 68.3
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 5.6e-47 191.0 120 75.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 5.6e-47 191.0 125 71.2
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 7.4e-47 190.7 120 73.3
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 7.4e-47 190.7 120 74.2
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.4e-47 190.7 120 75.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 9.6e-47 190.3 119 74.8
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 9.6e-47 190.3 120 75.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 9.6e-47 190.3 120 74.2
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 9.6e-47 190.3 120 75.0
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.3e-46 189.9 120 75.8
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.3e-46 189.9 126 69.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.3e-46 189.9 120 74.2
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.6e-46 189.5 120 73.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.6e-46 189.5 120 76.7
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.1e-46 189.1 120 75.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.1e-46 189.1 120 75.0
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.1e-46 189.1 125 71.2
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.8e-46 188.7 120 73.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.8e-46 188.7 119 71.4
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.8e-46 188.7 129 69.8
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.8e-46 188.7 120 72.5
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.7e-46 188.3 130 68.5
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 3.7e-46 188.3 129 69.0
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.7e-46 188.3 129 69.0
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.7e-46 188.3 120 74.2
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.7e-46 188.3 117 72.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.7e-46 188.3 120 70.0
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 4.8e-46 188.0 125 71.2
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.8e-46 188.0 120 73.3
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.8e-46 188.0 120 73.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 4.8e-46 188.0 120 70.8
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 6.2e-46 187.6 120 72.5
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.2e-46 187.6 120 74.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 6.2e-46 187.6 119 68.9
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.2e-46 187.6 120 75.0
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 6.2e-46 187.6 131 68.7
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 8.2e-46 187.2 125 72.0
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 8.2e-46 187.2 119 73.1
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 8.2e-46 187.2 119 73.1
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 8.2e-46 187.2 120 73.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.2e-46 187.2 119 73.9
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 8.2e-46 187.2 122 72.1
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.1e-45 186.8 127 70.1
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.1e-45 186.8 120 75.0
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.4e-45 186.4 120 71.7
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-45 186.4 129 69.0
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.4e-45 186.4 126 66.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.4e-45 186.4 119 68.1
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.4e-45 186.4 120 72.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.8e-45 186.0 131 68.7
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-45 186.0 127 68.5
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.4e-45 185.7 120 71.7
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-45 185.7 125 69.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.4e-45 185.7 120 71.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 3.1e-45 185.3 119 72.3
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.1e-45 185.3 119 72.3
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.1e-45 185.3 125 70.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.1e-45 185.3 119 74.8
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 5.3e-45 184.5 120 71.7
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 6.9e-45 184.1 131 67.9
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.9e-45 184.1 120 70.0
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 9.0e-45 183.7 120 70.0
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-44 183.3 119 71.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.2e-44 183.3 119 71.4
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-44 183.3 125 71.2
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-44 183.3 125 70.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.5e-44 183.0 111 77.5
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.5e-44 183.0 115 73.9
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.5e-44 183.0 119 73.1
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.5e-44 183.0 126 69.0
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 2.6e-44 182.2 119 71.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 2.6e-44 182.2 119 71.4
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.6e-44 182.2 118 72.0
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 3.4e-44 181.8 118 72.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 7.6e-44 180.6 125 69.6
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 7.6e-44 180.6 118 74.6
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 7.6e-44 180.6 126 68.3
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.0e-43 180.3 131 68.7
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.3e-43 179.9 118 71.2
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.3e-43 179.9 127 69.3
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-43 179.5 125 69.6
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-43 178.7 125 68.8
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 4.9e-43 177.9 122 66.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.1e-42 176.8 120 69.2
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.1e-42 176.8 118 65.3
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.2e-42 175.3 122 68.0
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.6e-41 172.9 110 72.7
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.6e-41 171.4 122 63.1
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 6.0e-41 171.0 177 52.5
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.1e-39 166.8 113 69.0
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.5e-39 166.4 119 67.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 3.7e-38 161.8 120 60.0
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.4e-37 159.1 119 68.1
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 2.4e-37 159.1 119 68.1
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 9.0e-37 157.1 104 70.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 7.2e-34 147.5 120 64.2
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.2e-33 146.7 120 63.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.8e-30 134.8 127 55.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.4e-29 133.3 129 58.9
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.9e-29 131.0 119 55.5
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 6.9e-29 131.0 79 74.7
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 9.1e-29 130.6 81 74.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 6.7e-24 114.4 81 66.7
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.6e-23 112.5 72 70.8
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 9.7e-23 110.5 127 44.9
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.8e-21 106.3 62 75.8
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 9.1e-21 104.0 62 74.2
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.9e-19 99.0 64 68.8
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.9e-19 99.0 60 78.3
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.8e-19 98.6 67 73.1
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 6.5e-19 97.8 74 59.5
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 6.5e-19 97.8 75 60.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.1e-18 97.1 69 63.8
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.5e-18 95.9 81 59.3
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.5e-18 95.9 72 55.6
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 3.6e-17 92.0 59 74.6
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 8.8e-16 87.4 96 52.1
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.5e-15 86.7 109 47.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 5.5e-10 68.2 41 75.6
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 7.2e-10 67.8 40 77.5
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.4e-07 58.5 121 38.0
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.7e-06 55.5 52 51.9


User provided reference genes

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