Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 0.0e+00 1418.7 723 100.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.1e-273 945.7 710 67.3
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.5e-269 932.2 705 68.1
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 1.1e-264 916.8 715 67.0
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.4e-261 906.4 725 66.3
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.6e-260 902.9 710 65.4
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 3.6e-260 901.7 718 66.6
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.8e-257 891.3 709 65.6
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.5e-255 886.3 717 64.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.9e-254 882.1 706 65.6
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-253 877.9 709 64.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.3e-251 872.5 709 64.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.0e-250 869.4 713 62.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.3e-250 868.6 712 64.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 4.3e-250 868.2 715 63.2
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 5.7e-250 867.8 715 63.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 9.7e-250 867.1 711 64.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.3e-249 866.7 740 63.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.7e-249 866.3 708 63.6
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.8e-249 865.5 707 63.2
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.3e-249 864.4 712 63.6
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.4e-248 862.4 709 62.8
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.1e-248 862.1 713 63.5
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.1e-248 861.7 713 63.0
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 6.9e-248 860.9 742 63.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.5e-247 859.8 705 64.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.5e-247 859.8 708 62.9
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 2.0e-247 859.4 707 62.7
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.6e-247 859.0 734 62.3
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.0e-246 857.1 712 63.3
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.7e-246 856.3 712 63.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 5.0e-246 854.7 706 62.5
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.4e-245 853.2 706 63.7
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.9e-245 852.8 712 63.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.2e-245 850.9 685 65.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.2e-245 850.9 707 63.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 7.2e-245 850.9 705 61.8
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.2e-244 850.1 712 63.5
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.2e-244 850.1 788 59.3
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.6e-244 849.7 699 64.8
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 2.1e-244 849.4 707 62.8
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.6e-244 848.6 716 62.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.6e-244 848.6 716 62.7
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 6.1e-244 847.8 717 62.3
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.0e-243 847.0 707 62.7
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.8e-243 846.3 709 63.6
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.3e-243 845.9 715 62.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 3.9e-243 845.1 709 63.9
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 8.8e-243 844.0 705 61.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.7e-241 839.7 707 62.8
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.1e-240 837.0 699 62.8
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.8e-240 836.3 727 62.3
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 3.1e-240 835.5 711 62.3
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.1e-240 835.1 699 62.2
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 7.0e-240 834.3 711 62.0
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.2e-239 833.6 705 63.1
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.6e-239 833.2 707 62.1
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.6e-239 832.4 699 61.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.6e-239 832.4 727 61.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 5.9e-239 831.2 734 59.1
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 7.7e-239 830.9 705 61.6
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.7e-239 830.9 709 61.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.3e-238 830.1 708 61.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.7e-238 829.7 700 61.7
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 5.0e-238 828.2 699 61.5
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 6.5e-238 827.8 699 63.1
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.1e-237 827.0 714 60.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.2e-237 825.5 699 61.5
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 4.2e-237 825.1 725 61.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.6e-236 823.2 700 61.9
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 6.1e-236 821.2 717 62.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.8e-235 819.7 699 60.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.3e-235 819.3 700 61.7
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.5e-234 816.6 701 61.1
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.6e-234 815.8 716 60.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 4.4e-234 815.1 705 60.4
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.7e-233 813.1 685 62.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.7e-233 812.0 700 60.7
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.1e-232 810.4 706 60.5
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.4e-232 810.1 682 62.8
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-231 807.0 719 59.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.7e-230 803.1 709 60.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 6.5e-230 801.2 701 60.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 6.5e-230 801.2 710 60.7
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 4.2e-229 798.5 703 59.9
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 9.4e-229 797.3 711 59.8
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.7e-228 795.8 703 59.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.7e-228 795.8 719 59.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 4.7e-228 795.0 703 59.7
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.8e-227 793.1 706 58.9
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.8e-227 793.1 711 59.8
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-227 792.7 719 58.8
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 4.0e-227 792.0 683 61.3
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 2.0e-226 789.6 708 59.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 3.7e-225 785.4 705 58.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.8e-225 785.0 658 64.3
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 8.3e-225 784.3 712 58.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 3.1e-224 782.3 701 59.8
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 5.4e-224 781.6 676 60.7
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.4e-224 781.6 718 58.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 9.1e-224 780.8 701 58.2
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 4.5e-223 778.5 718 57.4
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.5e-221 773.5 645 63.7
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.5e-221 772.7 708 57.5
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.5e-221 771.5 708 57.8
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.0e-219 765.4 641 62.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 6.8e-219 764.6 735 57.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.5e-218 763.5 707 56.9
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.7e-217 758.8 706 57.4
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.1e-216 757.3 712 56.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-215 753.1 698 57.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.1e-212 743.0 705 56.6
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.9e-209 731.9 710 56.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 4.1e-208 728.8 724 56.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 6.6e-206 721.5 730 55.9
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 8.0e-204 714.5 564 66.3
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.3e-198 697.2 652 59.0
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.0e-198 696.0 356 99.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.1e-195 687.6 701 55.1
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.4e-192 676.4 616 60.1
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 2.4e-192 676.4 705 52.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.7e-191 672.9 554 66.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.7e-190 670.2 577 61.7
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 7.3e-189 664.8 718 53.1
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.6e-186 656.4 706 50.7
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 2.6e-186 656.4 620 58.7
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 4.4e-186 655.6 716 52.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.0e-183 645.2 572 61.5
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.5e-181 640.6 499 66.5
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.2e-176 622.9 527 63.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.5e-162 577.4 892 42.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-157 561.2 721 46.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.2e-137 493.8 590 49.5
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.9e-105 387.1 438 51.1
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-104 382.9 261 72.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.2e-99 365.5 268 68.7
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.0e-70 270.4 189 75.1
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 3.3e-64 250.8 498 34.5
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.9e-59 235.0 377 40.1
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 3.6e-55 220.7 325 43.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 3.9e-49 200.7 558 32.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.4e-43 182.2 288 41.3
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.9e-40 171.8 121 66.1
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-38 166.0 138 63.8
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.4e-38 165.6 122 68.9
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 2.6e-29 134.8 162 46.9
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 3.9e-25 120.9 195 42.6
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.4e-21 107.8 180 41.1
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.7e-21 106.7 121 50.4
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.4e-19 102.4 325 28.0
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 5.5e-19 100.5 109 50.5
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 5.5e-19 100.5 109 50.5
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 6.1e-18 97.1 170 38.2
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-14 85.1 78 56.4
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 5.0e-12 77.4 58 60.3
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.6e-10 71.2 49 69.4
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.0e-10 70.1 37 89.2
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.8e-09 68.9 88 47.7
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.3e-09 68.6 50 60.0
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.4e-08 64.3 51 54.9
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.4e-08 64.3 51 54.9


User provided reference genes

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