Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41446 Sequoiadendron giganteum HOM05D006339 ORTHO05D007892 2.3e-156 555.4 266 100.0
Prupe.3G313900 Prunus persica HOM05D006339 ORTHO05D007892 1.2e-48 197.6 111 82.0
ATR0582G044 Amborella trichopoda HOM05D006339 ORTHO05D007892 2.7e-48 196.4 129 70.5
Ciclev10016247m.g Citrus clementina HOM05D006339 ORTHO05D007892 4.6e-48 195.7 111 82.0
Lj1g0006115 Lotus japonicus HOM05D006339 ORTHO05D007892 1.3e-47 194.1 111 82.0
Psat3g093240 Pisum sativum HOM05D006339 ORTHO05D007892 6.7e-47 191.8 123 74.0
PGSC0003DMG401031287 Solanum tuberosum HOM05D006339 ORTHO05D007892 6.7e-47 191.8 111 80.2
Phvul.008G019700 Phaseolus vulgaris HOM05D006339 ORTHO05D007892 8.7e-47 191.4 111 81.1
TPR.G15412 Trifolium pratense HOM05D006339 ORTHO05D007892 8.7e-47 191.4 111 79.3
VMungo1383G1391 Vigna mungo HOM05D006339 ORTHO05D007892 8.7e-47 191.4 111 81.1
GSVIVG01032984001 Vitis vinifera HOM05D006339 ORTHO05D007892 8.7e-47 191.4 109 81.7
Glyma.18G281300 Glycine max HOM05D006339 ORTHO05D007892 1.1e-46 191.0 111 80.2
Sopen09g034880 Solanum pennellii HOM05D006339 ORTHO05D007892 1.1e-46 191.0 111 80.2
Ca_08200_v3 Cicer arietinum L. HOM05D006339 ORTHO05D007892 1.9e-46 190.3 111 80.2
Medtr7g084140 Medicago truncatula HOM05D006339 ORTHO05D007892 1.9e-46 190.3 111 78.4
PGR042G1393 Punica granatum HOM05D006339 ORTHO05D007892 1.9e-46 190.3 110 79.1
Solyc09g091980.3 Solanum lycopersicum HOM05D006339 ORTHO05D007892 1.9e-46 190.3 111 80.2
TAR622G0978 Trochodendron aralioides HOM05D006339 ORTHO05D007892 1.9e-46 190.3 110 80.0
Ah.02g128820 Amaranthus hybridus HOM05D006339 ORTHO05D007892 3.3e-46 189.5 112 78.6
CAN.G1635.5 Capsicum annuum HOM05D006339 ORTHO05D007892 3.3e-46 189.5 111 79.3
CiPaw.03G001600 Carya illinoinensis HOM05D006339 ORTHO05D007892 4.3e-46 189.1 111 80.2
Migut.F00012 Erythranthe guttata HOM05D006339 ORTHO05D007892 4.3e-46 189.1 129 71.3
Nitab4.5_0000898g0050 Nicotiana tabacum HOM05D006339 ORTHO05D007892 4.3e-46 189.1 111 78.4
DCAR_014468 Daucus carota HOM05D006339 ORTHO05D007892 5.6e-46 188.7 105 82.9
Dinv33278 Davidia involucrata HOM05D006339 ORTHO05D007892 5.6e-46 188.7 111 78.4
Gohir.D07G240000 Gossypium hirsutum HOM05D006339 ORTHO05D007892 5.6e-46 188.7 118 74.6
Potri.001G432400 Populus trichocarpa HOM05D006339 ORTHO05D007892 5.6e-46 188.7 112 81.2
HPP92_023026 Vanilla planifolia HOM05D006339 ORTHO05D007892 5.6e-46 188.7 111 79.3
Lalb_Chr01g0015281 Lupinus albus HOM05D006339 ORTHO05D007892 7.4e-46 188.3 111 80.2
Gohir.A07G232800 Gossypium hirsutum HOM05D006339 ORTHO05D007892 9.6e-46 188.0 118 75.4
Peaxi162Scf00047g00520 Petunia axillaris HOM05D006339 ORTHO05D007892 9.6e-46 188.0 111 78.4
arahy.Tifrunner.gnm1.ann1.RW2HW9 Arachis hypogaea HOM05D006339 ORTHO05D007892 1.3e-45 187.6 111 81.1
arahy.Tifrunner.gnm1.ann1.WXC194 Arachis hypogaea HOM05D006339 ORTHO05D007892 1.3e-45 187.6 111 81.1
COL.COLO4_13376 Corchorus olitorius HOM05D006339 ORTHO05D007892 1.3e-45 187.6 111 78.4
MD09G1002300 Malus domestica HOM05D006339 ORTHO05D007892 1.3e-45 187.6 105 81.0
PSO017G1553 Papaver somniferum HOM05D006339 ORTHO05D007892 1.3e-45 187.6 113 77.0
QL02p069471 Quercus lobata HOM05D006339 ORTHO05D007892 1.3e-45 187.6 124 74.2
TWI81G1088 Tripterygium wilfordii HOM05D006339 ORTHO05D007892 1.3e-45 187.6 120 75.0
RcHm_v2.0_Chr2g0176551 Rosa chinensis HOM05D006339 ORTHO05D007892 1.6e-45 187.2 106 81.1
PSO478G5314 Papaver somniferum HOM05D006339 ORTHO05D007892 2.1e-45 186.8 118 74.6
Sabra16G0289600 Salix brachista HOM05D006339 ORTHO05D007892 2.1e-45 186.8 112 79.5
ClCG01G008260 Citrullus lanatus HOM05D006339 ORTHO05D007892 2.8e-45 186.4 111 78.4
Sed0000694 Sechium edule HOM05D006339 ORTHO05D007892 2.8e-45 186.4 121 75.2
vmacro01209 Vaccinium macrocarpon HOM05D006339 ORTHO05D007892 2.8e-45 186.4 123 73.2
Cpa.g.sc70.64 Carica papaya HOM05D006339 ORTHO05D007892 3.7e-45 186.0 111 77.5
Potri.001G429200 Populus trichocarpa HOM05D006339 ORTHO05D007892 3.7e-45 186.0 111 81.1
Potri.001G435300 Populus trichocarpa HOM05D006339 ORTHO05D007892 3.7e-45 186.0 111 81.1
Potri.011G139300 Populus trichocarpa HOM05D006339 ORTHO05D007892 3.7e-45 186.0 111 81.1
Thhalv10017294m.g Eutrema salsugineum HOM05D006339 ORTHO05D007892 4.8e-45 185.7 109 78.0
SGA_v2.0_scaffold44G16955 Striga asiatica HOM05D006339 ORTHO05D007892 8.2e-45 184.9 106 79.2
AL4G35130 Arabidopsis lyrata HOM05D006339 ORTHO05D007892 1.1e-44 184.5 110 77.3
MELO3C025063.2 Cucumis melo HOM05D006339 ORTHO05D007892 1.1e-44 184.5 106 81.1
Gorai.001G276200 Gossypium raimondii HOM05D006339 ORTHO05D007892 1.1e-44 184.5 119 74.8
Potri.001G425800 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.1e-44 184.5 111 80.2
Rhsim12G0052300 Rhododendron simsii HOM05D006339 ORTHO05D007892 1.1e-44 184.5 119 72.3
CsaV3_5G020130 Cucumis sativus L. HOM05D006339 ORTHO05D007892 1.4e-44 184.1 111 77.5
Duzib264G0796 Durio zibethinus HOM05D006339 ORTHO05D007892 1.4e-44 184.1 105 81.0
Lsat_1_v5_gn_0_22620 Lactuca sativa HOM05D006339 ORTHO05D007892 1.4e-44 184.1 118 74.6
Manes.11G076700 Manihot esculenta HOM05D006339 ORTHO05D007892 1.4e-44 184.1 111 80.2
Atru.chr6.2696 Acer truncatum HOM05D006339 ORTHO05D007892 1.8e-44 183.7 110 77.3
CSS0020777 Camellia sinensis var. sinensis HOM05D006339 ORTHO05D007892 1.8e-44 183.7 124 70.2
FvH4_6g54330 Fragaria vesca HOM05D006339 ORTHO05D007892 1.8e-44 183.7 106 78.3
Thecc.04G048000 Theobroma cacao HOM05D006339 ORTHO05D007892 1.8e-44 183.7 110 77.3
Cc07_g01310 Coffea canephora HOM05D006339 ORTHO05D007892 2.4e-44 183.3 106 80.2
THA.LOC104802366 Tarenaya hassleriana HOM05D006339 ORTHO05D007892 2.4e-44 183.3 110 75.5
Aqoxy5G03118 Aquilegia oxysepala HOM05D006339 ORTHO05D007892 3.1e-44 183.0 108 79.6
A05p07900 Brassica napus HOM05D006339 ORTHO05D007892 3.1e-44 183.0 110 74.5
C04p09550 Brassica napus HOM05D006339 ORTHO05D007892 3.1e-44 183.0 110 74.5
BolC4t22561H Brassica oleracea HOM05D006339 ORTHO05D007892 3.1e-44 183.0 110 74.5
BraA05t19756Z Brassica rapa HOM05D006339 ORTHO05D007892 3.1e-44 183.0 110 74.5
Carub.0004s2010 Capsella rubella HOM05D006339 ORTHO05D007892 3.1e-44 183.0 110 75.5
CARHR132720 Cardamine hirsuta HOM05D006339 ORTHO05D007892 3.1e-44 183.0 110 76.4
Eucgr.G01929 Eucalyptus grandis HOM05D006339 ORTHO05D007892 3.1e-44 183.0 128 69.5
HanXRQChr17g0550981 Helianthus annuus HOM05D006339 ORTHO05D007892 3.1e-44 183.0 120 73.3
SalBow7G3927 Salvia bowleyana HOM05D006339 ORTHO05D007892 4.0e-44 182.6 110 76.4
Hund04181 Selenicereus undatus HOM05D006339 ORTHO05D007892 4.0e-44 182.6 128 68.0
AT2G38130 Arabidopsis thaliana HOM05D006339 ORTHO05D007892 5.3e-44 182.2 110 76.4
Sabra11G0125200 Salix brachista HOM05D006339 ORTHO05D007892 5.3e-44 182.2 126 69.8
Actinidia09846 Actinidia chinensis HOM05D006339 ORTHO05D007892 9.0e-44 181.4 106 79.2
CDE06G1050 Ceratophyllum demersum HOM05D006339 ORTHO05D007892 9.0e-44 181.4 106 78.3
Aa31LG3G16140 Aethionema arabicum HOM05D006339 ORTHO05D007892 1.2e-43 181.0 110 73.6
MSTRG.16761 Avicennia marina HOM05D006339 ORTHO05D007892 1.5e-43 180.6 106 80.2
Hma1.2p1_1389F.1_g280000 Hydrangea macrophylla HOM05D006339 ORTHO05D007892 1.5e-43 180.6 105 78.1
Sp4g20450 Schrenkiella parvula HOM05D006339 ORTHO05D007892 1.5e-43 180.6 110 75.5
Sc07g0003800 Simmondsia chinensis HOM05D006339 ORTHO05D007892 1.5e-43 180.6 110 76.4
Sed0011617 Sechium edule HOM05D006339 ORTHO05D007892 2.0e-43 180.3 110 76.4
FAN05G1930 Fragaria x ananassa HOM05D006339 ORTHO05D007892 2.6e-43 179.9 106 76.4
unitig_0.g1640 Utricularia gibba HOM05D006339 ORTHO05D007892 2.6e-43 179.9 110 75.5
CDE02G1951 Ceratophyllum demersum HOM05D006339 ORTHO05D007892 7.6e-43 178.3 110 75.5
ECA246G5025 Erigeron canadensis HOM05D006339 ORTHO05D007892 7.6e-43 178.3 105 79.0
SMO266G0054 Selaginella moellendorffii HOM05D006339 ORTHO05D007892 2.2e-42 176.8 104 76.9
Nitab4.5_0001416g0050 Nicotiana tabacum HOM05D006339 ORTHO05D007892 4.9e-42 175.6 107 75.7
Pp3c21_5060 Physcomitrium patens HOM05D006339 ORTHO05D007892 1.9e-41 173.7 104 75.0
Haze_14951 Corylus avellana HOM05D006339 ORTHO05D007892 4.2e-41 172.6 133 64.7
Mapoly0127s0038 Marchantia polymorpha HOM05D006339 ORTHO05D007892 7.1e-41 171.8 104 76.0
MBI10_g42609_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 1.6e-40 170.6 125 69.6
Zm00001eb113280 Zea mays HOM05D006339 ORTHO05D007892 6.0e-40 168.7 107 74.8
MBI10_g46354_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 7.9e-40 168.3 102 76.5
MBI10_g47709_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 7.9e-40 168.3 102 76.5
Os11g0525800 Oryza sativa ssp. japonica HOM05D006339 ORTHO05D007892 7.9e-40 168.3 127 67.7
Pp3c18_17900 Physcomitrium patens HOM05D006339 ORTHO05D007892 7.9e-40 168.3 104 73.1
Zm00001eb198110 Zea mays HOM05D006339 ORTHO05D007892 1.0e-39 167.9 107 73.8
AUR62017432 Chenopodium quinoa HOM05D006339 ORTHO05D007892 9.7e-38 161.4 89 82.0
Oeu048678.3 Olea europaea HOM05D006339 ORTHO05D007892 1.6e-37 160.6 155 54.8
Lj7C617T19 Lonicera japonica HOM05D006339 ORTHO05D007892 6.9e-36 155.2 94 74.5
CBR_g48357 Chara braunii HOM05D006339 ORTHO05D007892 4.5e-35 152.5 131 53.4
MD05G1042000 Malus domestica HOM05D006339 ORTHO05D007892 8.5e-34 148.3 85 81.2
Cre14.g623800 Chlamydomonas reinhardtii HOM05D006339 ORTHO05D007892 2.3e-31 140.2 132 53.8
PRCOL_00001995 Prasinoderma coloniale HOM05D006339 ORTHO05D007892 1.9e-30 137.1 107 58.9
Duzib187G1607 Durio zibethinus HOM05D006339 ORTHO05D007892 8.2e-29 131.7 110 60.9
EL10Ac6g13407 Beta vulgaris HOM05D006339 ORTHO05D007892 1.4e-28 131.0 110 56.4
MCO12G247 Micromonas commoda HOM05D006339 ORTHO05D007892 5.0e-26 122.5 106 54.7
Nn3g16274 Nelumbo nucifera HOM05D006339 ORTHO05D007892 6.7e-23 112.1 59 88.1
Potri.001G433800 Populus trichocarpa HOM05D006339 ORTHO05D007892 2.0e-22 110.5 64 84.4
FAN02G3444 Fragaria x ananassa HOM05D006339 ORTHO05D007892 3.3e-22 109.8 66 74.2
Haze_27130 Corylus avellana HOM05D006339 ORTHO05D007892 4.4e-22 109.4 107 48.6
AUR62037822 Chenopodium quinoa HOM05D006339 ORTHO05D007892 1.4e-20 104.4 59 79.7
Cfa007162 Carpinus fangiana HOM05D006339 ORTHO05D007892 2.0e-14 84.0 45 86.7
SEGI_37505 Sequoiadendron giganteum HOM05D006648 ORTHO05D025756 1.8e-12 77.4 77 53.2
AagrBONN_evm.TU.Sc2ySwM_369.240 Anthoceros agrestis HOM05D006339 ORTHO05D007892 1.3e-10 71.2 46 76.1
BolC4t22511H Brassica oleracea HOM05D006339 ORTHO05D007892 5.0e-10 69.3 82 45.1
SEGI_15723 Sequoiadendron giganteum HOM05D001336 ORTHO05D001211 6.1e-08 62.4 55 60.0
SEGI_00389 Sequoiadendron giganteum HOM05D000121 ORTHO05D012651 2.3e-07 60.5 64 54.7
SEGI_41016 Sequoiadendron giganteum HOM05D004933 ORTHO05D005465 6.7e-07 58.9 57 56.1


User provided reference genes

Program Settings