Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 0.0e+00 2503.4 1441 100.0
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 5.3e-82 310.8 1347 32.2
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.3e-31 142.1 371 34.0
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.6e-31 141.4 363 31.1
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.6e-30 138.7 380 32.9
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.4e-29 136.0 662 27.5
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.1e-29 135.6 432 27.8
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.7e-27 129.8 383 30.0
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 3.2e-26 125.6 452 28.3
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-24 120.2 489 26.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.7e-24 119.8 1227 32.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.9e-24 118.6 577 27.6
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 6.6e-24 117.9 650 25.1
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 2.5e-23 115.9 878 24.1
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.3e-23 115.5 446 26.9
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.3e-23 114.4 442 26.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.3e-22 113.6 697 24.5
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.1e-22 112.8 772 24.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 3.6e-22 112.1 479 28.2
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.1e-21 110.5 661 26.3
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.8e-21 109.8 382 28.8
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.4e-21 109.4 630 24.8
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.1e-21 109.0 395 27.3
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.1e-21 109.0 395 27.3
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.3e-21 108.2 373 28.2
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 9.0e-21 107.5 370 30.8
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.0e-20 106.3 395 30.6
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.4e-20 105.5 599 26.7
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 4.4e-20 105.1 366 28.1
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.8e-20 104.8 379 30.9
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 5.8e-20 104.8 1306 25.9
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 5.8e-20 104.8 375 31.5
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 7.6e-20 104.4 366 29.2
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.9e-19 102.4 558 25.4
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.8e-19 102.1 756 25.4
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.8e-19 102.1 438 26.9
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.9e-19 101.7 501 25.9
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 4.9e-19 101.7 389 28.3
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-18 100.5 387 28.9
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.2e-18 99.0 293 29.4
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 3.2e-18 99.0 631 23.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.2e-18 98.6 293 29.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 7.1e-18 97.8 361 30.2
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 1.2e-17 97.1 581 25.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.6e-17 96.7 525 27.0
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-17 96.7 676 23.8
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.1e-17 96.3 514 26.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.0e-16 94.0 322 29.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.0e-16 94.0 334 29.0
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-16 93.6 469 26.7
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.7e-16 93.2 693 28.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.7e-16 93.2 632 26.6
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 5.1e-16 91.7 569 26.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 5.1e-16 91.7 616 25.5
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 5.1e-16 91.7 448 26.8
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 6.6e-16 91.3 615 25.0
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 8.7e-16 90.9 364 26.9
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.5e-15 89.4 368 26.6
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.3e-15 88.6 615 25.2
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.6e-15 88.2 364 25.3
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 5.6e-15 88.2 369 26.8
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 9.6e-15 87.4 1106 32.6
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.1e-14 86.3 502 26.7
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.8e-14 85.9 703 23.6
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 3.6e-14 85.5 343 27.1
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 4.8e-14 85.1 429 26.8
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 6.2e-14 84.7 517 26.5
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 8.1e-14 84.3 573 25.5
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 8.1e-14 84.3 633 24.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 8.1e-14 84.3 684 25.3
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.1e-13 84.0 440 25.9
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.4e-13 83.6 520 26.0
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.4e-13 83.6 621 25.9
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-13 83.2 417 23.3
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 3.1e-13 82.4 305 26.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 4.0e-13 82.0 465 25.2
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 4.0e-13 82.0 547 25.8
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 4.0e-13 82.0 383 25.6
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.3e-13 81.6 574 26.3
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.3e-13 81.6 547 25.8
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 5.3e-13 81.6 720 25.3
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.9e-13 81.3 547 25.8
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.9e-13 81.3 686 23.2
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 6.9e-13 81.3 484 23.6
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 6.9e-13 81.3 363 27.5
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 9.0e-13 80.9 464 25.0
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 9.0e-13 80.9 305 26.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 9.0e-13 80.9 497 23.1
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.5e-12 80.1 416 25.2
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.5e-12 80.1 372 29.0
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.0e-12 79.7 310 28.4
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.0e-12 79.7 701 24.0
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 3.4e-12 79.0 576 25.7
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.4e-12 79.0 421 27.3
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 7.6e-12 77.8 442 23.5
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 7.6e-12 77.8 442 23.5
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.6e-12 77.8 548 25.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.6e-12 77.8 707 24.0
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 9.9e-12 77.4 443 23.5
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 9.9e-12 77.4 306 28.4
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 9.9e-12 77.4 615 24.4
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.3e-11 77.0 506 24.7
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-11 76.6 605 24.5
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.7e-11 76.6 462 23.6
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.2e-11 76.3 434 26.5
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-11 75.9 548 25.0
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.9e-11 75.9 507 24.5
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.9e-11 75.9 656 25.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.8e-11 75.5 646 22.6
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 6.4e-11 74.7 695 23.2
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 8.4e-11 74.3 524 25.6
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 8.4e-11 74.3 452 25.0
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.4e-10 72.8 620 25.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.4e-10 71.6 756 23.1
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 5.4e-10 71.6 511 23.9
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 7.1e-10 71.2 320 25.9
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 4.6e-09 68.6 439 26.2
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 4.6e-09 68.6 588 26.0
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 6.0e-09 68.2 710 21.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.0e-09 68.2 422 24.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.0e-08 67.4 697 22.8
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.0e-08 67.4 403 26.1
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.3e-08 67.0 465 24.9
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.3e-08 67.0 655 23.2
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.3e-08 67.0 366 26.2
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.8e-08 66.6 762 22.8
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 3.0e-08 65.9 656 21.3
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.9e-08 65.5 510 23.1
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 3.9e-08 65.5 727 22.1
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.9e-08 65.5 376 25.8
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.1e-08 65.1 377 27.3
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 8.7e-08 64.3 250 29.2
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.1e-07 63.9 681 22.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.5e-07 63.5 459 24.2
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 3.3e-07 62.4 652 22.7
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 3.3e-07 62.4 708 21.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.3e-06 60.5 672 23.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.6e-06 60.1 719 22.4
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.1e-06 59.7 771 21.9
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.7e-06 58.9 645 22.3
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 8.1e-06 57.8 388 24.0


User provided reference genes

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