Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 3.7e-186 654.8 358 100.0
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.9e-60 237.3 233 57.9
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 5.5e-20 102.8 222 33.3
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 3.3e-17 93.6 194 36.1
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 4.3e-17 93.2 223 35.4
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 9.7e-17 92.0 243 33.3
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 1.3e-16 91.7 237 31.6
SEGI_20656 Sequoiadendron giganteum HOM05D001759 ORTHO05D003964 1.7e-16 91.3 70 70.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.7e-16 91.3 193 33.7
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.8e-16 90.5 215 34.0
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 2.8e-16 90.5 232 32.8
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 2.8e-16 90.5 239 31.0
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 3.7e-16 90.1 219 30.6
SEGI_28857 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 6.3e-16 89.4 92 59.8
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 8.2e-16 89.0 243 32.9
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-15 88.6 216 34.3
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.1e-15 88.6 214 30.8
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-15 88.2 230 31.3
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.4e-15 87.4 208 35.1
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.1e-15 86.7 214 32.7
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.1e-15 86.7 214 32.7
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 4.1e-15 86.7 210 31.4
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 6.9e-15 85.9 237 30.0
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 9.1e-15 85.5 232 32.3
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.2e-14 85.1 180 38.3
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 1.2e-14 85.1 204 34.8
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.5e-14 84.7 198 34.3
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 1.5e-14 84.7 232 29.7
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.4e-14 83.6 203 34.0
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.5e-14 83.2 203 33.0
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 4.5e-14 83.2 247 31.2
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 7.7e-14 82.4 254 28.7
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 7.7e-14 82.4 218 31.7
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.0e-13 82.0 191 32.5
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 1.7e-13 81.3 192 36.5
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 2.2e-13 80.9 205 32.7
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 2.9e-13 80.5 235 31.9
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 2.9e-13 80.5 191 33.0
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 3.8e-13 80.1 216 32.4
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 5.0e-13 79.7 192 36.5
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.0e-13 79.7 213 31.0
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 5.0e-13 79.7 214 32.7
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 6.5e-13 79.3 190 33.2
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 8.5e-13 79.0 242 29.8
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 8.5e-13 79.0 209 33.5
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.5e-13 79.0 235 30.6
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-12 78.2 182 36.3
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 1.4e-12 78.2 182 36.3
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.4e-12 78.2 202 32.7
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.4e-12 78.2 235 32.3
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 1.4e-12 78.2 241 29.9
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 1.9e-12 77.8 182 36.3
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.9e-12 77.8 182 36.3
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 1.9e-12 77.8 241 28.6
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.5e-12 77.4 191 31.9
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.5e-12 77.4 211 33.2
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 4.2e-12 76.6 192 34.9
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 4.2e-12 76.6 239 31.8
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 4.2e-12 76.6 204 31.4
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.2e-12 76.6 204 31.4
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.2e-12 76.6 167 32.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 5.5e-12 76.3 197 33.5
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 5.5e-12 76.3 192 34.9
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 5.5e-12 76.3 232 31.0
SEGI_06184 Sequoiadendron giganteum HOM05D000266 ORTHO05D000765 5.5e-12 76.3 115 45.2
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 5.5e-12 76.3 194 30.4
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.2e-12 75.9 204 30.9
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 9.4e-12 75.5 198 32.8
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 1.2e-11 75.1 207 31.9
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.6e-11 74.7 249 30.5
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.6e-11 74.7 285 28.8
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.6e-11 74.7 189 33.3
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 2.7e-11 73.9 222 29.7
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 2.7e-11 73.9 213 34.3
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.7e-11 73.9 217 31.8
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 2.7e-11 73.9 209 30.6
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 2.7e-11 73.9 202 30.7
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 2.7e-11 73.9 205 31.2
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 4.7e-11 73.2 196 30.6
SEGI_10255 Sequoiadendron giganteum HOM05D041656 ORTHO05D013318 4.7e-11 73.2 118 44.9
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 6.1e-11 72.8 188 28.7
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 6.1e-11 72.8 196 33.7
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 7.9e-11 72.4 199 31.2
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 7.9e-11 72.4 193 32.6
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 7.9e-11 72.4 223 29.6
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.0e-10 72.0 198 30.8
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-10 71.6 185 33.0
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 1.4e-10 71.6 170 31.8
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 1.4e-10 71.6 188 31.4
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 1.8e-10 71.2 232 29.3
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 1.8e-10 71.2 194 30.4
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.8e-10 71.2 201 30.3
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 2.3e-10 70.9 207 30.4
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 2.3e-10 70.9 190 34.7
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 3.0e-10 70.5 208 29.3
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.0e-10 70.5 193 33.2
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.0e-10 70.5 209 30.1
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 3.0e-10 70.5 239 29.3
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 3.0e-10 70.5 219 29.7
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 3.0e-10 70.5 237 30.8
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 5.1e-10 69.7 241 29.9
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 5.1e-10 69.7 218 31.2
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 5.1e-10 69.7 235 29.4
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 6.7e-10 69.3 179 34.1
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.7e-10 69.3 198 29.8
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 1.1e-09 68.6 189 32.8
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.1e-09 68.6 232 29.3
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.1e-09 68.6 179 34.1
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.1e-09 68.6 189 29.1
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.5e-09 68.2 191 33.5
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.5e-09 68.2 195 29.2
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.5e-09 68.2 231 28.6
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 1.5e-09 68.2 232 28.9
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.0e-09 67.8 192 33.9
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.6e-09 67.4 195 33.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.3e-09 67.0 231 28.6
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 4.4e-09 66.6 193 29.0
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.7e-09 66.2 194 32.5
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 5.7e-09 66.2 223 29.6
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 5.7e-09 66.2 223 29.6
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 5.7e-09 66.2 220 29.1
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 5.7e-09 66.2 231 28.1
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 7.4e-09 65.9 196 32.1
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 7.4e-09 65.9 326 24.5
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 7.4e-09 65.9 140 47.9
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 9.7e-09 65.5 203 29.1
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.3e-08 65.1 203 32.0
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 1.7e-08 64.7 195 30.3
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.7e-08 64.7 211 28.9
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 2.2e-08 64.3 192 33.3
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 2.2e-08 64.3 195 27.7
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 2.2e-08 64.3 228 30.7
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 3.7e-08 63.5 191 30.9
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 3.7e-08 63.5 227 29.1
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.7e-08 63.5 200 28.0
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 3.7e-08 63.5 176 30.7
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 3.7e-08 63.5 200 31.0
SEGI_18087 Sequoiadendron giganteum HOM05D041559 ORTHO05D386563 4.8e-08 63.2 69 53.6
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.4e-07 61.6 267 27.7
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.8e-07 61.2 191 29.3
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 3.1e-07 60.5 195 29.7
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 3.1e-07 60.5 219 27.9
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 3.1e-07 60.5 222 28.4
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.1e-07 60.1 199 30.2
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.0e-07 59.3 147 29.3
SEGI_09124 Sequoiadendron giganteum HOM05D041559 ORTHO05D003964 7.0e-07 59.3 41 75.6
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.2e-06 58.5 214 29.0
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 1.2e-06 58.5 228 26.3
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.0e-06 57.8 159 28.9
SEGI_39699 Sequoiadendron giganteum HOM05D041559 ORTHO05D037476 2.0e-06 57.8 59 57.6
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 4.5e-06 56.6 172 29.1


User provided reference genes

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