Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 2.7e-74 282.0 144 100.0
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 4.6e-10 68.6 122 36.1
SEGI_16996 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 6.0e-10 68.2 166 31.3
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.3e-09 66.2 144 31.9
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 3.9e-09 65.5 86 38.4
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 3.9e-09 65.5 144 31.9
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 5.1e-09 65.1 137 32.8
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 6.7e-09 64.7 102 37.3
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 6.7e-09 64.7 40 60.0
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 8.7e-09 64.3 127 32.3
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 1.5e-08 63.5 106 37.7
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.5e-08 63.5 143 31.5
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 1.9e-08 63.2 44 59.1
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.9e-08 63.2 78 43.6
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 2.5e-08 62.8 115 37.4
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 2.5e-08 62.8 65 46.2
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 4.3e-08 62.0 35 68.6
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 5.6e-08 61.6 96 37.5
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 5.6e-08 61.6 59 49.2
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 5.6e-08 61.6 44 59.1
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 5.6e-08 61.6 126 32.5
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 7.4e-08 61.2 52 53.8
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 7.4e-08 61.2 150 34.0
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 9.6e-08 60.8 39 64.1
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.3e-07 60.5 33 69.7
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.3e-07 60.5 33 69.7
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 1.3e-07 60.5 97 40.2
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.3e-07 60.5 41 56.1
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 1.6e-07 60.1 33 69.7
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 1.6e-07 60.1 133 33.8
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 1.6e-07 60.1 113 35.4
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 1.6e-07 60.1 33 69.7
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.6e-07 60.1 44 56.8
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 1.6e-07 60.1 101 36.6
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 1.6e-07 60.1 130 33.1
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 2.1e-07 59.7 131 37.4
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 2.1e-07 59.7 44 54.5
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 2.1e-07 59.7 146 32.9
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 2.1e-07 59.7 108 35.2
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 2.8e-07 59.3 58 48.3
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 2.8e-07 59.3 88 38.6
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 3.7e-07 58.9 130 36.9
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 4.8e-07 58.5 134 35.8
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 4.8e-07 58.5 34 58.8
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 6.2e-07 58.2 42 52.4
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 8.1e-07 57.8 55 47.3
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 8.1e-07 57.8 33 63.6
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 8.1e-07 57.8 33 63.6
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 8.1e-07 57.8 33 63.6
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 8.1e-07 57.8 33 63.6
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 8.1e-07 57.8 33 63.6
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 8.1e-07 57.8 33 66.7
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 8.1e-07 57.8 38 60.5
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 8.1e-07 57.8 38 60.5
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 8.1e-07 57.8 98 33.7
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 8.1e-07 57.8 140 30.0
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 8.1e-07 57.8 41 56.1
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.1e-06 57.4 94 37.2
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.1e-06 57.4 35 62.9
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 1.1e-06 57.4 117 37.6
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 1.1e-06 57.4 51 54.9
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.4e-06 57.0 32 65.6
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 1.4e-06 57.0 140 30.0
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 1.4e-06 57.0 33 63.6
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 1.4e-06 57.0 33 63.6
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 1.8e-06 56.6 38 57.9
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 1.8e-06 56.6 93 36.6
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.8e-06 56.6 93 36.6
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 2.4e-06 56.2 57 47.4
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 2.4e-06 56.2 57 47.4
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 2.4e-06 56.2 57 47.4
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 2.4e-06 56.2 57 47.4
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 2.4e-06 56.2 135 34.1
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 2.4e-06 56.2 43 46.5
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 2.4e-06 56.2 31 67.7
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 2.4e-06 56.2 124 33.9
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 3.1e-06 55.8 45 48.9
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 3.1e-06 55.8 33 66.7
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 3.1e-06 55.8 37 59.5
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 3.1e-06 55.8 154 28.6
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 3.1e-06 55.8 125 32.8
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 4.0e-06 55.5 57 45.6
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 4.0e-06 55.5 44 50.0
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 4.0e-06 55.5 86 33.7
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 5.3e-06 55.1 55 43.6
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.3e-06 55.1 31 61.3
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 5.3e-06 55.1 117 34.2
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 5.3e-06 55.1 34 61.8
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 5.3e-06 55.1 37 56.8
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 5.3e-06 55.1 30 66.7
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 5.3e-06 55.1 30 66.7
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 5.3e-06 55.1 55 45.5
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 6.9e-06 54.7 32 62.5
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 6.9e-06 54.7 77 37.7
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 6.9e-06 54.7 134 31.3
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 6.9e-06 54.7 31 61.3
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 6.9e-06 54.7 54 48.1
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 6.9e-06 54.7 40 55.0
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 6.9e-06 54.7 50 44.0
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 6.9e-06 54.7 54 46.3
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 6.9e-06 54.7 41 56.1
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 6.9e-06 54.7 31 61.3
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 9.0e-06 54.3 34 61.8
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 9.0e-06 54.3 34 61.8
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 9.0e-06 54.3 51 43.1
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 9.0e-06 54.3 34 61.8
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 9.0e-06 54.3 132 31.8
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 9.0e-06 54.3 34 61.8
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 9.0e-06 54.3 31 71.0


User provided reference genes

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