Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.4e-242 842.0 422 100.0
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 3.4e-39 167.2 261 43.7
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 1.5e-26 125.2 280 37.5
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.7e-25 120.6 265 37.4
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.8e-24 118.2 238 40.3
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 4.1e-24 117.1 271 33.2
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 5.3e-24 116.7 235 38.7
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.6e-23 115.2 228 38.6
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 5.0e-22 110.2 278 35.3
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 5.0e-22 110.2 232 34.9
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 6.5e-22 109.8 254 33.9
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 6.5e-22 109.8 254 33.9
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 6.5e-22 109.8 232 34.9
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.5e-21 108.6 268 37.3
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.5e-21 108.6 278 35.3
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 1.5e-21 108.6 239 38.1
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.9e-21 108.2 236 36.4
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 2.5e-21 107.8 241 36.5
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 2.5e-21 107.8 241 36.5
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.5e-21 107.8 278 34.2
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 2.5e-21 107.8 259 33.2
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 4.2e-21 107.1 265 34.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 5.5e-21 106.7 244 36.5
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 7.2e-21 106.3 278 34.2
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 7.2e-21 106.3 261 37.2
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 9.4e-21 105.9 268 34.0
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.2e-20 105.5 239 36.0
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.2e-20 105.5 259 32.8
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.1e-20 104.8 239 37.7
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 2.1e-20 104.8 273 34.8
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 2.7e-20 104.4 266 32.0
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.7e-20 104.4 244 37.3
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 2.7e-20 104.4 203 37.4
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 4.7e-20 103.6 237 38.0
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 6.1e-20 103.2 237 37.1
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 8.0e-20 102.8 239 37.7
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 8.0e-20 102.8 243 35.8
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.0e-19 102.4 267 33.7
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.0e-19 102.4 243 32.9
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.0e-19 102.4 243 33.7
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 1.8e-19 101.7 271 34.3
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.8e-19 101.7 238 34.0
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.8e-19 101.7 282 33.3
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 6.7e-19 99.8 244 34.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.2e-18 99.0 267 30.7
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.2e-18 99.0 271 33.2
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.2e-18 99.0 275 33.8
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 2.0e-18 98.2 268 34.7
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.0e-18 98.2 231 34.6
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 3.3e-18 97.4 253 33.6
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 3.3e-18 97.4 232 31.5
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 3.3e-18 97.4 260 34.2
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 4.4e-18 97.1 235 37.4
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 5.7e-18 96.7 266 34.6
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.7e-18 96.7 193 36.8
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 7.5e-18 96.3 242 34.3
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 7.5e-18 96.3 273 34.1
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 7.5e-18 96.3 275 32.4
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 9.7e-18 95.9 236 35.6
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 9.7e-18 95.9 265 33.6
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.7e-17 95.1 227 33.9
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 2.8e-17 94.4 249 32.5
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 2.8e-17 94.4 249 32.5
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 2.8e-17 94.4 274 32.5
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 2.8e-17 94.4 278 33.1
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.7e-17 94.0 259 32.4
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 3.7e-17 94.0 192 39.6
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 4.8e-17 93.6 235 34.9
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 4.8e-17 93.6 242 36.0
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 6.3e-17 93.2 272 34.9
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 6.3e-17 93.2 272 35.3
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 8.2e-17 92.8 239 32.2
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 8.2e-17 92.8 271 32.8
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.1e-16 92.4 247 34.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.1e-16 92.4 269 33.1
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 1.4e-16 92.0 245 32.2
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.4e-16 92.0 239 33.5
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.4e-16 92.0 257 31.5
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.8e-16 91.7 245 33.9
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.4e-16 91.3 265 31.3
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 3.1e-16 90.9 238 34.0
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 4.1e-16 90.5 237 32.9
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 5.3e-16 90.1 269 32.0
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 5.3e-16 90.1 264 34.1
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 5.3e-16 90.1 268 34.0
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 5.3e-16 90.1 268 34.0
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 5.3e-16 90.1 234 32.5
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 5.3e-16 90.1 236 34.3
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 5.3e-16 90.1 277 32.5
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 7.0e-16 89.7 250 32.0
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 7.0e-16 89.7 242 33.1
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 9.1e-16 89.4 238 34.5
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.6e-15 88.6 242 31.8
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 1.6e-15 88.6 246 31.3
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.0e-15 88.2 196 34.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.0e-15 88.2 266 33.5
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.7e-15 87.8 266 32.7
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 3.5e-15 87.4 241 34.9
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 4.5e-15 87.0 252 35.3
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 4.5e-15 87.0 267 33.3
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 4.5e-15 87.0 266 31.2
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.9e-15 86.7 245 33.9
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 7.7e-15 86.3 267 33.3
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 7.7e-15 86.3 267 33.3
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.3e-14 85.5 238 34.5
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.7e-14 85.1 274 31.4
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 2.2e-14 84.7 263 31.9
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.9e-14 84.3 274 31.0
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 3.8e-14 84.0 244 32.4
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 8.5e-14 82.8 193 35.2
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 1.1e-13 82.4 240 32.1
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.5e-13 82.0 233 29.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.9e-13 81.6 264 32.6
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.9e-13 81.6 268 31.0
SEGI_08506 Sequoiadendron giganteum HOM05D001013 ORTHO05D004597 3.2e-13 80.9 62 69.4
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 3.2e-13 80.9 236 32.6
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 4.2e-13 80.5 229 30.6
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 9.4e-13 79.3 265 29.4
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.2e-12 79.0 277 29.6
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 3.0e-11 74.3 114 42.1
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 4.8e-09 67.0 238 29.8
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 2.4e-08 64.7 110 36.4
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 2.7e-07 61.2 227 28.2
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 7.7e-07 59.7 239 29.3


User provided reference genes

Program Settings