Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 8.0e-76 287.0 139 100.0
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 5.7e-50 201.1 133 66.9
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 7.5e-50 200.7 133 69.9
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 4.9e-49 198.0 133 65.4
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 1.8e-48 196.1 133 65.4
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 5.4e-48 194.5 133 67.7
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 7.0e-48 194.1 133 64.7
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 7.0e-48 194.1 133 63.2
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 1.2e-47 193.4 133 64.7
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 5.9e-47 191.0 133 63.9
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 5.9e-47 191.0 133 63.9
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 5.9e-47 191.0 133 64.7
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 1.0e-46 190.3 133 64.7
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 1.0e-46 190.3 133 62.4
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.3e-46 189.9 133 63.9
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 1.7e-46 189.5 133 61.7
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.7e-46 189.5 133 63.9
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 3.0e-46 188.7 133 63.9
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.9e-46 188.3 133 62.4
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.9e-46 188.3 133 61.7
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 5.0e-46 188.0 133 63.2
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 8.6e-46 187.2 133 60.9
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 8.6e-46 187.2 133 60.9
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.1e-45 186.8 133 59.4
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.1e-45 186.8 133 59.4
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.9e-45 186.0 133 63.2
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 2.5e-45 185.7 133 60.9
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 2.5e-45 185.7 133 62.4
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 2.5e-45 185.7 133 62.4
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.3e-45 185.3 133 58.6
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 3.3e-45 185.3 133 60.9
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 4.3e-45 184.9 133 60.2
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 4.3e-45 184.9 133 60.9
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 5.6e-45 184.5 133 61.7
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 9.5e-45 183.7 133 60.9
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 9.5e-45 183.7 133 64.7
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 1.2e-44 183.3 133 60.2
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 1.2e-44 183.3 133 63.9
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 1.6e-44 183.0 133 60.2
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 2.1e-44 182.6 133 61.7
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 2.1e-44 182.6 133 61.7
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 2.1e-44 182.6 133 63.2
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 2.8e-44 182.2 133 61.7
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 2.8e-44 182.2 133 61.7
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 4.7e-44 181.4 133 63.9
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 6.2e-44 181.0 133 60.9
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 6.2e-44 181.0 133 62.4
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 8.0e-44 180.6 133 63.2
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 1.0e-43 180.3 133 61.7
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 1.0e-43 180.3 133 60.2
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 1.4e-43 179.9 133 62.4
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 1.4e-43 179.9 133 60.2
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 1.8e-43 179.5 133 60.9
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 1.8e-43 179.5 133 62.4
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 1.8e-43 179.5 133 58.6
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 1.8e-43 179.5 133 60.2
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 1.8e-43 179.5 133 62.4
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 2.3e-43 179.1 133 60.9
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 2.3e-43 179.1 133 58.6
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 4.0e-43 178.3 133 62.4
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 5.2e-43 177.9 133 59.4
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 5.2e-43 177.9 133 57.9
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 5.2e-43 177.9 133 61.7
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 5.2e-43 177.9 144 55.6
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 6.8e-43 177.6 133 60.2
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 6.8e-43 177.6 133 61.7
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 1.5e-42 176.4 133 58.6
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 1.5e-42 176.4 133 59.4
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.0e-42 176.0 133 59.4
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 2.6e-42 175.6 133 61.7
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 3.4e-42 175.3 133 56.4
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 3.4e-42 175.3 131 60.3
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 4.4e-42 174.9 133 57.9
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 7.5e-42 174.1 133 56.4
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 9.8e-42 173.7 133 57.9
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 9.8e-42 173.7 133 56.4
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 9.8e-42 173.7 134 57.5
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 9.8e-42 173.7 133 60.9
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 57.9
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 56.4
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 60.9
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 60.2
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 60.2
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 55.6
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 1.3e-41 173.3 133 54.9
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 2.2e-41 172.6 133 55.6
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 2.2e-41 172.6 133 55.6
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 2.9e-41 172.2 133 55.6
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 1.1e-40 170.2 133 56.4
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 1.4e-40 169.9 133 55.6
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 1.4e-40 169.9 134 58.2
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 1.9e-40 169.5 133 54.9
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 2.4e-40 169.1 133 57.1
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 3.2e-40 168.7 133 56.4
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 4.1e-40 168.3 133 57.1
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 3.5e-39 165.2 132 56.8
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 4.6e-39 164.9 133 54.9
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 4.6e-39 164.9 133 56.4
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 7.8e-39 164.1 133 57.1
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.7e-38 162.9 133 57.1
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 1.7e-38 162.9 133 53.4
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 1.7e-38 162.9 133 51.9
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 2.3e-38 162.5 132 55.3
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 2.3e-38 162.5 132 55.3
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.0e-38 162.2 132 55.3
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 1.9e-37 159.5 132 54.5
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 3.3e-37 158.7 133 57.1
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.2e-34 150.2 131 51.9
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 9.8e-34 147.1 132 52.3
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 9.8e-34 147.1 134 47.8
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 2.9e-33 145.6 131 50.4
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 2.9e-33 145.6 133 47.4
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 3.7e-33 145.2 133 47.4
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.4e-32 143.3 133 48.1
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 4.1e-32 141.7 131 48.1
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 9.2e-32 140.6 133 52.6
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.2e-31 140.2 133 46.6
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 4.6e-31 138.3 111 55.0
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 6.0e-31 137.9 133 51.1
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 1.3e-30 136.7 133 45.1
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.9e-29 132.9 133 48.1
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 3.3e-29 132.1 108 54.6
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.1e-28 129.4 130 50.8
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 5.2e-27 124.8 97 61.9
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.4e-24 116.7 133 43.6
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.9e-17 92.4 76 51.3
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 6.0e-15 84.7 136 31.6
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.1e-08 63.9 49 55.1
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.0e-07 58.2 35 65.7
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.0e-07 58.2 35 65.7
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 6.0e-07 58.2 120 25.8
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 2.3e-06 56.2 32 68.8


User provided reference genes

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