Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.5e-95 350.9 171 100.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.4e-37 159.5 139 59.0
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.9e-36 154.1 138 55.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.2e-34 149.1 153 51.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 5.4e-34 148.3 121 62.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.4e-34 148.3 151 53.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 5.4e-34 148.3 153 52.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.5e-33 145.6 162 49.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.6e-33 145.2 151 51.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 6.0e-33 144.8 126 58.7
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.0e-33 144.8 126 58.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.0e-33 144.8 152 51.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.8e-33 144.4 153 50.3
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.0e-32 144.1 126 58.7
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.3e-32 143.7 152 50.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-32 143.7 154 51.3
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.7e-32 143.3 136 54.4
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.7e-32 143.3 152 50.7
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.7e-32 143.3 152 50.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.7e-32 143.3 153 50.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.3e-32 142.9 152 50.7
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 3.9e-32 142.1 138 52.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.1e-32 141.7 143 53.8
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 6.6e-32 141.4 140 52.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.6e-32 141.4 127 55.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 8.7e-32 141.0 167 50.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 8.7e-32 141.0 126 54.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.1e-31 140.6 126 54.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.5e-31 140.2 126 56.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.5e-31 140.2 137 53.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.9e-31 139.8 152 50.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.5e-31 139.4 138 55.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.3e-31 138.7 130 57.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 5.6e-31 138.3 126 54.8
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.3e-31 137.9 125 56.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 9.6e-31 137.5 137 51.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.1e-30 136.3 112 58.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-30 136.0 153 49.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.6e-30 135.6 124 56.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 6.2e-30 134.8 125 55.2
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 6.2e-30 134.8 150 48.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 8.1e-30 134.4 126 54.8
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.1e-29 132.5 153 49.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.1e-29 132.5 177 45.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.1e-29 132.5 142 50.0
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.0e-29 132.1 120 53.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 6.9e-29 131.3 125 53.6
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 6.9e-29 131.3 159 45.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 9.0e-29 131.0 139 51.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.2e-28 130.6 109 57.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.2e-28 130.6 127 55.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.0e-28 129.8 146 49.3
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.0e-28 129.8 138 47.8
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.6e-28 129.4 158 47.5
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.6e-28 129.4 137 48.2
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.6e-28 129.4 109 58.7
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.4e-28 129.0 151 49.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.4e-28 129.0 142 49.3
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.5e-28 128.6 119 53.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.8e-28 128.3 122 52.5
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.8e-28 128.3 159 45.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.8e-28 128.3 123 55.3
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 9.9e-28 127.5 123 53.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-27 127.1 113 56.6
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.3e-27 127.1 146 45.9
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.3e-27 127.1 127 52.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-27 127.1 118 55.9
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.7e-27 126.7 109 56.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.7e-27 126.7 155 46.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.7e-27 126.7 98 62.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.9e-27 125.9 109 56.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.8e-27 125.6 114 56.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.9e-27 125.2 109 55.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.9e-27 125.2 99 61.6
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.4e-27 124.8 114 55.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.4e-27 124.8 155 45.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 6.4e-27 124.8 132 50.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.4e-27 124.8 157 45.2
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 6.4e-27 124.8 157 45.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 8.4e-27 124.4 108 58.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.4e-27 124.4 118 55.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 8.4e-27 124.4 112 54.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-26 124.0 118 52.5
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.1e-26 124.0 135 50.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.4e-26 123.6 109 54.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.4e-26 123.6 157 45.9
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.4e-26 123.6 146 45.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.4e-26 123.6 156 44.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.4e-26 123.6 125 51.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.9e-26 123.2 109 53.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.9e-26 123.2 114 56.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.9e-26 123.2 123 49.6
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.9e-26 123.2 117 53.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.9e-26 123.2 111 55.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.4e-26 122.9 114 54.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.4e-26 122.9 145 44.8
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.2e-26 122.5 165 45.5
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.2e-26 122.5 148 46.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.2e-26 122.1 114 56.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.2e-26 122.1 111 55.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.4e-26 121.7 138 47.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 5.4e-26 121.7 138 46.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.4e-26 121.7 109 55.0
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 9.3e-26 120.9 99 58.6
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-25 120.6 151 47.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.6e-25 120.2 97 58.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.1e-25 119.8 109 51.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.7e-25 119.4 108 56.5
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.6e-25 118.6 109 51.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 4.6e-25 118.6 109 50.5
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.6e-25 118.6 153 45.1
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 4.6e-25 118.6 114 55.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.6e-25 118.6 97 56.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.0e-25 118.2 165 43.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.9e-25 117.9 97 54.6
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.0e-24 117.5 97 54.6
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.0e-24 117.5 97 54.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.3e-24 117.1 109 50.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.3e-24 117.1 112 52.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.3e-24 116.3 97 53.6
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.3e-24 116.3 99 57.6
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-24 115.9 109 49.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 3.0e-24 115.9 128 50.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.0e-24 115.9 112 52.7
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 6.7e-24 114.8 97 53.6
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 6.7e-24 114.8 97 53.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.1e-23 114.0 116 51.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.1e-23 114.0 112 54.5
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.5e-23 113.6 109 48.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.5e-23 112.8 119 50.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.5e-23 112.8 125 46.4
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.3e-23 112.5 153 42.5
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-22 110.2 106 53.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.7e-22 109.0 116 49.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 6.2e-22 108.2 128 45.3
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-20 104.0 87 59.8
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.0e-20 103.2 153 41.8
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.9e-18 96.7 193 35.8
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 9.3e-18 94.4 113 44.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-16 90.5 125 42.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 4.1e-13 79.0 127 38.6
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 5.8e-12 75.1 84 45.2
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.5e-10 69.7 140 31.4
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 6.1e-09 65.1 77 45.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 5.1e-08 62.0 92 40.2
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 8.7e-08 61.2 74 44.6


User provided reference genes

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