Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.9e-245 850.9 394 100.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 5.6e-175 617.8 296 97.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.7e-118 430.3 337 59.6
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.7e-118 429.1 349 57.0
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 5.3e-117 425.2 333 59.8
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 6.9e-117 424.9 351 56.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-116 423.7 356 54.2
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.0e-116 423.3 337 57.0
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.0e-116 423.3 337 57.9
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 3.4e-116 422.5 339 57.2
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.5e-116 422.2 337 56.1
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.5e-116 422.2 356 54.2
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.9e-116 421.8 337 59.1
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.9e-116 421.8 354 55.4
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.7e-115 420.2 339 56.3
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.2e-115 419.9 338 59.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.2e-115 419.9 339 57.5
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 5.0e-115 418.7 337 57.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 6.5e-115 418.3 336 58.3
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.4e-114 417.2 352 56.0
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.9e-114 416.8 339 57.2
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.9e-114 416.8 339 57.5
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 2.5e-114 416.4 338 58.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.2e-114 415.6 334 56.0
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.2e-114 415.6 309 62.5
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.5e-114 415.2 337 57.3
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.6e-113 413.7 337 57.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 3.6e-113 412.5 353 53.8
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.1e-113 411.8 337 57.0
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.0e-112 411.0 347 55.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.0e-112 411.0 334 55.7
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 1.4e-112 410.6 337 57.3
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.8e-112 410.2 336 56.2
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.8e-112 410.2 337 57.0
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 3.0e-112 409.5 341 56.3
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.9e-112 409.1 339 55.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 3.9e-112 409.1 354 54.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 6.7e-112 408.3 337 56.1
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 8.8e-112 407.9 336 57.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 8.8e-112 407.9 341 56.3
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 8.8e-112 407.9 340 55.0
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 8.8e-112 407.9 337 55.8
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.1e-111 407.5 338 55.3
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.1e-111 407.5 339 56.0
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.5e-111 407.1 333 57.1
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 2.0e-111 406.8 340 57.1
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 2.6e-111 406.4 340 55.9
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 4.4e-111 405.6 348 54.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.8e-110 402.9 337 55.8
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.8e-110 402.1 346 54.3
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 8.2e-110 401.4 338 55.6
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 8.2e-110 401.4 333 56.8
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.1e-109 401.0 333 56.5
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.4e-109 400.6 337 54.0
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.4e-109 400.6 338 54.4
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.4e-109 400.6 338 54.4
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.4e-109 400.6 333 57.4
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.4e-109 400.6 337 55.5
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.4e-109 400.6 346 54.0
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.4e-109 399.8 346 53.8
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.1e-109 399.4 353 53.8
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 4.1e-109 399.1 337 53.7
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 4.1e-109 399.1 338 54.7
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 5.3e-109 398.7 341 54.5
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 9.1e-109 397.9 337 53.7
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 9.1e-109 397.9 337 53.7
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.2e-108 397.5 339 54.3
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.5e-108 397.1 342 54.4
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.0e-108 396.7 357 51.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.0e-108 396.7 357 52.1
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 3.4e-108 396.0 347 54.5
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 3.4e-108 396.0 334 53.6
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.4e-108 396.0 334 56.0
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 4.5e-108 395.6 357 52.1
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.5e-108 395.6 333 55.9
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 4.5e-108 395.6 340 54.7
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.0e-107 394.4 353 51.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.0e-107 394.4 335 56.4
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.0e-107 394.4 335 56.4
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.3e-107 394.0 339 54.6
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.7e-107 393.7 357 51.0
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.7e-107 393.7 337 54.6
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.2e-107 393.3 338 55.0
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.9e-107 392.9 348 53.4
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.9e-107 392.9 339 54.6
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 3.8e-107 392.5 343 52.8
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.0e-107 392.1 335 56.1
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 5.0e-107 392.1 335 55.5
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 5.0e-107 392.1 337 54.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.1e-106 391.0 334 54.2
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.4e-106 390.6 350 53.4
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 9.4e-106 387.9 353 51.3
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-105 387.5 317 56.8
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.2e-105 387.5 343 55.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-105 387.1 317 56.8
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.1e-105 386.7 386 51.0
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 4.7e-105 385.6 316 56.6
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 8.0e-105 384.8 296 60.8
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-104 384.0 317 56.5
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 6.7e-104 381.7 350 52.3
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.4e-101 374.0 427 44.7
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.2e-100 370.9 338 53.6
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.0e-100 370.2 338 53.0
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.3e-99 367.5 324 52.2
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.5e-98 364.0 426 43.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 5.5e-98 362.1 376 48.9
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 6.1e-97 358.6 333 52.6
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 6.1e-97 358.6 346 49.1
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 9.7e-95 351.3 335 49.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.4e-93 347.4 333 51.1
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.5e-92 342.4 300 55.0
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-91 340.5 270 57.8
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.8e-91 339.3 270 57.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.5e-90 336.7 318 51.9
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 3.2e-90 336.3 270 57.0
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.2e-90 336.3 293 54.6
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 6.1e-89 332.0 360 46.7
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.0e-88 331.3 352 45.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.2e-87 327.8 257 58.8
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 2.2e-86 323.6 282 53.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.4e-85 320.9 339 46.9
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 3.1e-85 319.7 266 56.0
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 3.0e-80 303.1 306 48.0
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.5e-74 281.6 218 57.8
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.2e-73 281.2 311 48.6
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.6e-73 279.6 216 58.8
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.0e-72 276.6 236 54.7
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.2e-68 264.6 338 42.3
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.0e-68 263.8 194 59.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.6e-68 262.7 224 54.5
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.5e-66 257.7 215 53.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.3e-58 229.9 193 56.5
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-56 224.9 192 53.6
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 5.8e-55 219.2 167 59.3
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 4.9e-54 216.1 184 57.1
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.4e-45 187.2 248 40.7
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.5e-39 167.9 228 39.5
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.0e-35 155.2 146 51.4
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.1e-35 152.9 140 49.3
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.9e-29 134.4 126 49.2
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.3e-22 111.7 107 50.5
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.1e-17 94.4 95 44.2
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.7e-17 93.6 85 47.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 9.0e-16 89.0 86 45.3
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.5e-15 86.7 97 45.4
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 3.5e-12 77.0 122 33.6


User provided reference genes

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