Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 0.0e+00 1885.5 994 100.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 2.9e-305 1052.0 1000 56.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.2e-304 1048.5 984 56.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.0e-302 1043.5 951 57.6
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.4e-302 1043.1 974 58.0
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 5.2e-302 1041.2 988 56.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 8.8e-302 1040.4 988 56.4
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 8.8e-302 1040.4 1009 56.5
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.7e-301 1037.7 946 57.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.3e-300 1036.6 951 57.5
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 3.7e-300 1035.0 979 57.1
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 5.3e-299 1031.2 1006 54.2
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 5.3e-299 1031.2 960 56.6
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 4.5e-298 1028.1 976 57.5
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 5.9e-298 1027.7 980 55.7
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 2.9e-297 1025.4 948 57.5
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.8e-297 1025.0 992 56.4
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 4.2e-296 1021.5 994 55.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 3.0e-294 1015.4 1006 54.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 6.7e-294 1014.2 998 55.4
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 2.0e-293 1012.7 957 55.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 2.0e-293 1012.7 976 56.2
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 2.2e-292 1009.2 973 56.4
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.8e-292 1008.8 982 56.0
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 4.8e-292 1008.1 969 56.7
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 6.3e-292 1007.7 970 55.6
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 6.3e-292 1007.7 984 55.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.1e-291 1006.9 992 54.9
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 1.4e-291 1006.5 972 55.5
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.4e-291 1005.7 1007 54.5
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 4.1e-291 1005.0 1014 54.6
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 5.3e-291 1004.6 1020 55.2
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 9.1e-291 1003.8 943 57.1
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 9.1e-291 1003.8 961 56.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.2e-290 1003.4 979 55.9
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.6e-290 1003.0 1015 53.8
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.5e-290 1001.9 1024 54.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.7e-289 999.6 973 55.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 3.8e-289 998.4 956 56.4
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 6.5e-289 997.7 982 55.5
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.5e-289 997.7 978 55.3
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.5e-288 996.5 894 58.6
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-288 996.5 969 55.5
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 7.2e-288 994.2 945 56.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 9.4e-288 993.8 1012 54.4
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.6e-287 993.0 996 52.8
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 2.7e-287 992.3 996 53.5
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 3.6e-287 991.9 953 55.5
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.4e-286 989.9 952 56.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.4e-286 989.9 942 56.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 6.8e-286 987.6 945 55.6
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 1.5e-285 986.5 1008 54.6
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 5.7e-285 984.6 976 54.8
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 7.5e-285 984.2 963 55.5
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 9.8e-285 983.8 975 53.9
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.7e-284 983.0 957 54.3
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 3.7e-284 981.9 1021 53.3
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 8.3e-284 980.7 979 55.0
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.1e-283 978.8 949 54.9
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 4.1e-283 978.4 995 53.7
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 1.2e-282 976.9 976 54.3
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.9e-281 972.2 941 54.8
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 5.0e-281 971.5 949 54.6
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.1e-280 970.3 973 54.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 4.2e-280 968.4 957 55.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 9.5e-280 967.2 985 53.8
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 2.1e-279 966.1 949 54.5
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 8.0e-279 964.1 958 54.0
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.8e-278 963.0 942 54.2
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.0e-278 962.2 930 54.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.5e-277 959.9 1012 53.6
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 2.0e-277 959.5 1012 51.1
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 2.0e-277 959.5 957 52.4
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 2.6e-277 959.1 942 54.6
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 3.4e-277 958.7 979 52.0
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 9.8e-277 957.2 973 51.7
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 9.8e-277 957.2 1012 50.5
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.7e-276 956.4 1009 50.8
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.2e-276 956.1 952 54.2
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.8e-276 955.7 1015 50.8
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 2.8e-276 955.7 979 51.9
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 6.3e-276 954.5 979 52.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 1.4e-275 953.4 1005 51.0
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 1.8e-275 953.0 1005 51.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 2.4e-275 952.6 956 52.6
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 3.1e-275 952.2 943 54.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 4.1e-275 951.8 972 52.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 9.2e-275 950.7 986 53.1
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.2e-274 950.3 1002 52.1
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.2e-274 950.3 1074 50.8
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.2e-274 950.3 949 53.8
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 2.0e-274 949.5 989 51.2
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 7.8e-274 947.6 988 53.2
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.7e-273 946.4 974 52.7
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.8e-273 945.3 987 52.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 5.0e-273 944.9 968 54.4
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 9.8e-269 930.6 1020 49.3
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 4.1e-267 925.2 972 52.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 3.9e-265 918.7 952 52.7
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.1e-262 910.6 1004 50.0
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 5.8e-261 904.8 956 51.0
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.2e-260 902.9 939 53.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 2.9e-260 902.5 950 50.5
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.4e-259 900.2 1012 48.7
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.1e-258 896.3 850 56.5
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.0e-257 894.0 865 56.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 6.8e-254 881.3 794 58.1
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.1e-248 864.0 983 48.9
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.2e-244 849.7 788 56.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 4.6e-242 842.0 970 47.7
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 4.9e-236 822.0 784 55.7
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.4e-235 819.7 954 47.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.6e-213 746.5 755 54.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.1e-211 741.1 703 54.8
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.8e-198 697.2 692 54.6
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.8e-190 670.6 692 51.4
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 6.1e-186 655.6 646 55.6
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 9.1e-174 615.1 545 58.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 7.2e-171 605.5 545 58.0
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 7.5e-168 595.5 563 52.0
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.4e-158 564.7 596 50.2
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 3.6e-154 550.1 551 53.7
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.4e-150 538.1 1073 34.2
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.0e-148 531.9 533 55.3
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 6.6e-140 502.7 975 36.2
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.1e-138 497.7 567 48.9
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 9.6e-131 472.2 985 31.3
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.5e-120 438.3 470 52.1
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 9.9e-120 435.6 608 42.4
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 4.2e-118 430.3 958 30.8
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-108 397.5 573 42.6
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 7.6e-104 382.9 319 60.8
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.4e-88 330.9 326 54.3
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 4.2e-86 323.9 397 44.1
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 4.5e-80 303.9 277 59.6
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-79 302.8 265 58.5
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.9e-79 301.2 249 63.1
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.3e-74 285.8 417 38.1
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-71 275.8 531 38.2
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 4.0e-68 264.2 561 31.7
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.5e-67 262.3 279 49.5
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.7e-66 258.8 233 55.4
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 5.3e-65 253.8 383 43.3
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-63 249.2 244 51.2
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 5.0e-63 247.3 161 83.9
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 4.2e-62 244.2 282 49.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.7e-61 240.7 551 33.4
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 3.4e-59 234.6 278 47.8
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.8e-58 231.5 247 51.8
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.7e-55 222.2 300 44.7
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 2.6e-51 208.4 222 45.5
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.8e-50 204.9 253 47.0
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 4.9e-50 204.1 192 53.6
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.0e-47 196.4 237 47.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.0e-47 194.1 595 29.6
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 6.1e-45 187.2 308 38.3
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-43 183.0 226 44.2
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 7.8e-40 170.2 134 60.4
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-39 169.1 192 50.0
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.0e-39 167.5 164 53.0
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 8.9e-36 156.8 158 52.5
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.2e-34 152.1 103 69.9
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 6.4e-34 150.6 123 61.8
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 4.6e-32 144.4 419 32.0
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 6.6e-31 140.6 407 33.2
SEGI_22189 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 4.9e-26 124.4 82 85.4
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.3e-23 116.3 162 45.7
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.5e-22 112.8 144 44.4
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.6e-21 108.2 75 62.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.6e-21 108.2 75 62.7
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.3e-18 99.8 175 37.7
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.9e-18 98.6 72 63.9
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.4e-17 95.5 179 35.2
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 4.1e-17 94.7 74 58.1
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-14 86.7 122 36.9
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.6e-13 82.8 98 51.0
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.1e-13 80.5 132 40.9
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 9.9e-11 73.6 139 34.5
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.3e-10 73.2 104 46.2
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 8.4e-10 70.5 267 31.1
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.6e-07 60.8 142 35.2


User provided reference genes

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