Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 3.0e-243 844.7 424 100.0
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 8.7e-65 251.9 427 39.1
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 9.6e-64 248.4 428 40.4
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 1.8e-62 244.2 441 36.5
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.8e-62 244.2 473 37.2
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 1.5e-61 241.1 460 36.5
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 3.4e-61 240.0 428 38.3
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 4.4e-61 239.6 447 37.1
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 5.8e-61 239.2 458 36.5
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 1.7e-60 237.7 453 36.9
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.9e-60 236.9 463 36.1
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 4.9e-60 236.1 446 37.4
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 3.2e-59 233.4 442 36.9
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 3.9e-57 226.5 441 35.8
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 5.1e-57 226.1 445 34.6
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 5.1e-57 226.1 457 35.2
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 7.3e-56 222.2 462 35.9
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 9.6e-56 221.9 412 37.1
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 9.6e-56 221.9 445 35.5
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 2.8e-55 220.3 426 35.7
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 3.6e-55 219.9 444 34.2
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 6.2e-55 219.2 412 35.4
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 8.1e-55 218.8 461 35.4
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 8.1e-55 218.8 424 33.7
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 8.1e-55 218.8 440 36.1
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 3.1e-54 216.9 451 33.9
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 5.3e-54 216.1 446 35.2
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 5.3e-54 216.1 469 35.0
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 9.0e-54 215.3 475 34.7
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 9.0e-54 215.3 448 35.0
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 1.2e-53 214.9 457 34.6
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 1.2e-53 214.9 452 35.0
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 1.5e-53 214.5 439 34.9
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.0e-53 214.2 476 34.7
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 3.4e-53 213.4 413 35.8
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 4.5e-53 213.0 444 34.2
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 1.3e-52 211.5 447 35.3
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.3e-52 211.5 449 35.2
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.9e-52 210.3 442 35.1
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.9e-52 210.3 442 35.1
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 4.9e-52 209.5 463 34.6
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 4.9e-52 209.5 466 35.0
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 6.4e-52 209.1 447 34.5
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 6.4e-52 209.1 447 34.0
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 1.4e-51 208.0 463 33.0
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 1.4e-51 208.0 461 34.9
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 1.9e-51 207.6 447 35.3
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 2.4e-51 207.2 459 34.4
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 2.4e-51 207.2 409 36.7
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 3.2e-51 206.8 453 33.1
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 3.2e-51 206.8 453 33.1
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 3.2e-51 206.8 441 33.8
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 4.2e-51 206.5 466 35.2
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 5.4e-51 206.1 413 35.4
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 7.1e-51 205.7 447 33.6
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 9.3e-51 205.3 448 33.3
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 9.3e-51 205.3 459 34.0
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 1.2e-50 204.9 447 33.6
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.6e-50 204.5 478 33.7
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 2.1e-50 204.1 445 34.8
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 2.7e-50 203.8 461 33.6
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 2.7e-50 203.8 471 33.5
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 3.5e-50 203.4 416 34.6
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 3.5e-50 203.4 451 33.9
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 4.6e-50 203.0 454 33.0
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 6.0e-50 202.6 446 33.9
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 6.0e-50 202.6 441 34.9
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.3e-49 201.4 458 32.3
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 2.3e-49 200.7 487 33.1
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 3.0e-49 200.3 441 31.1
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 3.0e-49 200.3 389 36.0
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 5.1e-49 199.5 292 42.8
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 5.1e-49 199.5 447 33.1
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 6.7e-49 199.1 456 32.0
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 8.7e-49 198.7 446 33.4
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 8.7e-49 198.7 446 33.4
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.1e-48 198.4 451 32.8
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 3.3e-48 196.8 476 33.8
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 4.3e-48 196.4 450 35.1
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 7.4e-48 195.7 455 31.9
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 1.3e-47 194.9 425 33.2
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 2.1e-47 194.1 460 33.0
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 2.8e-47 193.7 483 32.5
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 6.2e-47 192.6 445 33.7
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 8.1e-47 192.2 444 32.7
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 2.4e-46 190.7 330 37.9
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 3.1e-46 190.3 430 34.0
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 5.3e-46 189.5 212 49.1
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 6.9e-46 189.1 457 32.4
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 5.8e-45 186.0 423 32.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 5.8e-45 186.0 453 31.3
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 7.6e-45 185.7 447 32.2
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 9.9e-45 185.3 436 34.2
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 8.4e-44 182.2 407 34.2
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 2.5e-43 180.6 446 33.6
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.3e-41 174.9 416 32.7
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 9.0e-38 162.2 364 34.3
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 3.4e-37 160.2 184 50.5
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 4.5e-37 159.8 364 34.3
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 7.6e-37 159.1 311 36.0
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 4.2e-35 153.3 244 40.6
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 1.6e-34 151.4 208 41.3
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.8e-33 147.9 418 31.1
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 3.9e-33 146.7 281 33.5
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 3.9e-33 146.7 184 42.9
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.9e-32 144.4 417 30.7
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.8e-31 140.6 231 35.9
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 5.0e-28 129.8 180 43.9
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 8.5e-28 129.0 184 39.1
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 5.5e-27 126.3 183 39.9
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 7.9e-26 122.5 237 35.0
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 8.8e-25 119.0 182 38.5
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 2.8e-23 114.0 180 37.8
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 2.8e-23 114.0 180 37.8
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 2.0e-21 107.8 130 47.7
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 3.8e-20 103.6 168 37.5
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 1.1e-19 102.1 179 35.2
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 7.9e-18 95.9 168 33.9
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.3e-16 90.5 184 32.1
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 4.4e-16 90.1 97 47.4
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 5.7e-16 89.7 403 25.1
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 3.7e-15 87.0 186 29.0
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.0e-13 81.3 158 35.4
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.9e-12 77.4 167 28.7
ATR1089G052 Amborella trichopoda HOM05D005905 ORTHO05D005996 9.4e-11 72.4 164 30.5
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 1.2e-10 72.0 162 32.1
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 4.7e-10 70.1 273 26.0
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 8.0e-10 69.3 262 23.3
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 2.0e-08 64.7 169 30.2
Cre07.g316450 Chlamydomonas reinhardtii HOM05D005905 ORTHO05D005996 4.4e-08 63.5 201 29.4
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 4.4e-08 63.5 201 27.9
Zm00001eb340250 Zea mays HOM05D000001 ORTHO05D004044 9.7e-08 62.4 183 27.9
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 1.3e-07 62.0 201 26.4
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.3e-07 62.0 246 24.8
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.7e-07 61.6 246 24.4
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 1.7e-07 61.6 191 25.7
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 2.2e-07 61.2 187 25.1
Zm00001eb411920 Zea mays HOM05D000001 ORTHO05D004044 2.2e-07 61.2 215 26.5
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 2.8e-07 60.8 201 26.9
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 3.7e-07 60.5 190 25.3
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 3.7e-07 60.5 190 25.3
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 3.7e-07 60.5 201 24.9
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 4.8e-07 60.1 221 23.5
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 4.8e-07 60.1 169 28.4
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 6.3e-07 59.7 187 24.6
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 6.3e-07 59.7 187 24.6
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 6.3e-07 59.7 198 27.3
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 8.2e-07 59.3 198 26.3
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 1.1e-06 58.9 167 28.1
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.4e-06 58.5 187 26.7
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 1.8e-06 58.2 185 27.0
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 1.8e-06 58.2 215 26.5
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 1.8e-06 58.2 169 28.4
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 2.4e-06 57.8 264 24.2
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 2.4e-06 57.8 190 25.8
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 3.1e-06 57.4 201 24.9
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 5.3e-06 56.6 216 26.4
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 7.0e-06 56.2 221 23.1


User provided reference genes

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