Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 9.9e-133 476.9 253 100.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.1e-58 229.9 118 97.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.7e-39 166.0 125 63.2
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.6e-37 160.6 128 61.7
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 3.5e-37 159.5 124 59.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 4.6e-37 159.1 118 65.3
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 6.0e-37 158.7 118 63.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.0e-36 156.4 118 64.4
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 5.0e-36 155.6 118 63.6
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 6.6e-36 155.2 132 61.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.1e-35 154.5 119 62.2
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.9e-35 153.7 118 63.6
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.5e-35 153.3 122 63.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.5e-35 153.3 118 61.9
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.3e-35 152.9 118 62.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.3e-35 152.9 132 60.6
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 4.3e-35 152.5 124 59.7
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 4.3e-35 152.5 120 60.8
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.6e-35 152.1 124 58.9
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.6e-35 152.1 124 60.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.3e-35 151.8 117 63.2
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 7.3e-35 151.8 116 62.9
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 9.5e-35 151.4 122 63.9
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 9.5e-35 151.4 118 61.9
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 9.5e-35 151.4 128 59.4
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 1.2e-34 151.0 122 61.5
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.6e-34 150.6 118 61.9
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 2.1e-34 150.2 118 61.0
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.1e-34 150.2 119 60.5
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 2.1e-34 150.2 120 60.0
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.1e-34 150.2 120 60.0
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 2.8e-34 149.8 120 60.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.6e-34 149.4 118 62.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.6e-34 149.4 118 61.0
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 4.7e-34 149.1 118 61.0
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 4.7e-34 149.1 118 63.6
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 4.7e-34 149.1 120 59.2
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 6.2e-34 148.7 116 62.1
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 6.2e-34 148.7 124 58.9
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.2e-34 148.7 116 61.2
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 8.0e-34 148.3 116 62.1
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.1e-33 147.9 124 60.5
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.1e-33 147.9 116 61.2
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.4e-33 147.5 118 60.2
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.4e-33 147.5 116 61.2
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.3e-33 146.7 116 62.1
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 3.1e-33 146.4 118 60.2
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 4.0e-33 146.0 149 51.0
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.0e-33 146.0 116 61.2
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 4.0e-33 146.0 117 60.7
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 5.2e-33 145.6 116 62.1
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 5.2e-33 145.6 118 59.3
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 5.2e-33 145.6 120 59.2
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.2e-33 145.6 120 59.2
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.2e-33 145.6 120 59.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 5.2e-33 145.6 120 60.8
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 5.2e-33 145.6 120 59.2
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 6.8e-33 145.2 116 62.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.8e-33 145.2 116 60.3
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 8.9e-33 144.8 133 57.1
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 8.9e-33 144.8 132 54.5
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 8.9e-33 144.8 126 55.6
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 8.9e-33 144.8 118 61.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.2e-32 144.4 120 59.2
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.2e-32 144.4 118 58.5
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.5e-32 144.1 116 62.1
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.0e-32 143.7 118 59.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.0e-32 143.7 118 58.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 3.4e-32 142.9 118 57.6
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.4e-32 142.5 116 62.1
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 5.8e-32 142.1 112 61.6
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.8e-32 142.1 123 56.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 9.8e-32 141.4 118 59.3
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 9.8e-32 141.4 118 59.3
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 9.8e-32 141.4 118 60.2
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.3e-31 141.0 118 60.2
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 6.4e-31 138.7 166 46.4
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 8.3e-31 138.3 118 57.6
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 8.3e-31 138.3 115 59.1
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.1e-30 137.9 166 45.8
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-30 136.3 118 57.6
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-30 136.3 118 57.6
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-30 136.3 118 57.6
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 3.2e-30 136.3 118 56.8
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 7.0e-30 135.2 125 53.6
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 9.2e-30 134.8 112 59.8
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.2e-30 134.8 165 47.3
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.2e-29 134.4 132 54.5
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.2e-29 134.4 124 54.8
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.6e-29 134.0 193 43.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.0e-29 133.7 123 53.7
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 6.0e-29 132.1 123 53.7
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 7.8e-29 131.7 123 52.8
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 7.8e-29 131.7 123 52.8
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.8e-29 131.7 124 55.6
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 7.8e-29 131.7 116 56.9
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.0e-28 131.3 146 47.3
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.0e-28 131.3 153 48.4
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.7e-28 130.6 123 52.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.7e-28 130.6 123 52.8
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.3e-28 130.2 142 49.3
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.9e-28 129.4 124 54.0
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 6.6e-28 128.6 123 52.0
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 8.6e-28 128.3 112 58.0
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-27 127.9 123 51.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.3e-27 125.9 118 53.4
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 9.5e-27 124.8 118 50.0
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.6e-26 124.0 108 56.5
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.6e-26 124.0 96 62.5
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 2.1e-26 123.6 97 60.8
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 8.1e-26 121.7 123 52.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.1e-25 121.3 92 59.8
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-25 121.3 93 61.3
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-25 121.3 126 50.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.3e-25 120.2 162 48.8
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 6.8e-25 118.6 95 57.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 8.9e-25 118.2 95 60.0
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.5e-24 117.5 116 52.6
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.5e-24 117.5 127 48.8
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.0e-24 117.1 93 60.2
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 2.6e-24 116.7 93 55.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.4e-24 115.9 120 48.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 5.8e-24 115.5 124 48.4
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 2.1e-21 107.1 107 56.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.7e-21 106.7 88 59.1
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.0e-20 104.8 84 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.3e-20 104.4 124 46.0
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 6.6e-20 102.1 84 65.5
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.1e-18 97.1 120 45.8
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.2e-16 91.3 97 52.6
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.4e-16 89.4 85 52.9
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.9e-15 86.7 71 59.2
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.4e-15 85.1 97 49.5
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 8.1e-10 68.6 91 42.9
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 8.1e-10 68.6 58 56.9
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.4e-09 67.8 75 50.7
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.4e-09 67.8 65 52.3
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 2.4e-09 67.0 54 64.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 4.0e-09 66.2 69 50.7
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 9.0e-09 65.1 40 60.0
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.2e-08 64.7 42 59.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.8e-08 62.4 93 41.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.4e-06 55.8 66 50.0


User provided reference genes

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