Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 0.0e+00 3759.1 1956 100.0
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 4.1e-101 374.8 2195 27.5
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 9.2e-77 293.9 1495 29.6
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.0e-75 290.4 1527 27.8
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.6e-73 283.1 1495 28.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 2.3e-67 262.7 1535 27.1
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.3e-67 262.7 1490 29.0
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.0e-67 262.3 1497 28.3
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.5e-66 259.2 1507 27.9
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.6e-65 256.5 1524 27.0
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.1e-65 256.1 1524 27.4
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 6.8e-64 251.1 1503 27.4
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 4.4e-63 248.4 615 35.6
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 2.2e-62 246.1 2153 26.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.6e-60 240.0 1506 27.8
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.1e-60 239.6 1925 26.1
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 3.5e-60 238.8 1499 27.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 6.0e-60 238.0 1675 25.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 7.8e-60 237.7 1583 26.7
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.0e-59 237.3 561 38.0
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 1.7e-59 236.5 1578 27.6
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.0e-59 235.7 1846 25.9
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.9e-58 233.0 1479 27.8
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.3e-58 231.1 1505 27.1
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.2e-57 230.3 540 36.5
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.8e-57 229.2 1508 27.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 8.1e-57 227.6 1513 26.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.3e-56 226.1 533 38.3
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.6e-55 222.6 616 35.2
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 2.6e-55 222.6 561 37.1
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.4e-55 221.9 1500 27.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 5.8e-55 221.5 1489 25.9
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.7e-54 219.9 592 36.0
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 6.4e-54 218.0 1508 27.1
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.9e-53 216.5 574 35.0
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.9e-53 216.5 1810 25.6
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.9e-53 216.5 2061 24.6
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 4.1e-53 215.3 1826 25.7
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 9.2e-53 214.2 448 39.1
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.2e-52 213.8 1502 27.5
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.2e-52 213.8 425 40.5
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.5e-52 212.2 1840 24.8
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 3.5e-52 212.2 1846 25.6
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.3e-51 210.3 1548 26.2
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.7e-51 209.9 1489 25.7
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.7e-51 209.9 1496 26.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.0e-51 209.1 1467 27.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 5.1e-51 208.4 1832 26.4
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 8.6e-51 207.6 1727 24.8
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.5e-50 206.8 510 37.3
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 3.3e-50 205.7 1494 27.0
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 3.3e-50 205.7 542 36.0
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 3.3e-50 205.7 1830 25.9
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 3.3e-50 205.7 1887 25.3
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 4.3e-50 205.3 1509 26.5
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 4.3e-50 205.3 1510 26.6
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 5.6e-50 204.9 1527 26.9
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.2e-49 203.8 219 58.4
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-49 203.4 355 43.4
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.8e-49 202.6 1504 26.0
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 3.6e-49 202.2 530 36.2
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 3.6e-49 202.2 586 33.3
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 4.7e-49 201.8 1819 26.3
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 5.2e-48 198.4 1515 25.9
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.9e-48 197.6 1504 26.7
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.2e-47 197.2 452 37.6
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.2e-47 197.2 1573 26.9
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.2e-47 197.2 1500 26.8
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.0e-47 196.4 442 37.1
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.0e-47 196.4 444 38.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 2.0e-47 196.4 551 34.5
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 3.4e-47 195.7 465 36.6
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 3.4e-47 195.7 1314 27.7
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.4e-47 195.3 1497 27.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.4e-47 195.3 511 36.6
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.8e-47 194.9 1520 26.4
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 9.9e-47 194.1 454 36.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 9.9e-47 194.1 1766 26.2
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.7e-46 193.4 446 37.7
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 6.4e-46 191.4 445 37.3
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 6.4e-46 191.4 437 37.5
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.1e-45 190.7 445 38.0
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.9e-45 189.9 519 34.9
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.4e-45 189.5 469 36.2
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 2.4e-45 189.5 512 34.8
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 3.2e-45 189.1 448 36.6
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 4.2e-45 188.7 438 37.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.6e-44 186.8 449 37.2
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.1e-44 186.4 395 37.5
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.1e-44 186.4 1501 25.3
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 4.6e-44 185.3 202 58.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.0e-43 184.1 467 35.1
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.3e-43 183.7 1508 25.5
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.3e-43 183.0 1647 25.1
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 8.7e-43 181.0 1527 25.1
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 7.3e-42 177.9 589 32.1
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.2e-41 177.2 425 36.7
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.2e-41 177.2 1505 24.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.1e-41 176.4 1545 25.0
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.6e-41 175.6 192 57.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.6e-41 175.6 484 33.5
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 3.6e-41 175.6 1729 24.6
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.4e-40 173.7 1506 25.6
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.4e-40 173.7 583 33.6
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.4e-40 173.7 1520 26.1
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.5e-39 170.2 561 31.9
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.4e-39 169.1 498 33.7
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 5.8e-39 168.3 236 49.6
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 5.8e-39 168.3 957 27.1
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 9.9e-39 167.5 1787 24.2
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-38 167.2 2083 24.5
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 6.4e-38 164.9 1481 25.2
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.2e-37 162.2 1646 24.4
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 5.4e-37 161.8 468 36.8
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.1e-37 161.4 565 31.3
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 2.7e-36 159.5 579 31.8
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 3.5e-36 159.1 676 30.2
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 4.6e-36 158.7 541 31.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 7.8e-36 157.9 1831 25.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.3e-35 157.1 219 50.7
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 3.0e-35 156.0 1855 24.8
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.5e-34 152.9 531 32.4
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.3e-34 152.1 417 36.2
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 9.6e-34 151.0 1859 25.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.6e-33 150.2 1510 25.5
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 3.1e-32 146.0 1486 24.1
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 9.0e-32 144.4 900 23.7
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.6e-31 142.9 1640 25.2
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.2e-30 139.8 227 46.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.2e-29 136.0 244 43.9
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 7.1e-29 134.8 561 29.8
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 9.3e-29 134.4 532 29.5
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 2.1e-28 133.3 473 30.2
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 4.6e-28 132.1 643 30.0
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.4e-24 120.6 183 48.1
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.3e-22 114.0 1832 23.0
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.7e-22 113.6 225 43.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.7e-19 101.3 417 30.2
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.5e-18 99.8 93 64.5
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.0e-14 87.8 370 27.8
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.3e-11 76.6 1639 23.0
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.7e-10 72.0 1215 22.2
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 4.8e-09 68.9 228 30.3
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.0e-08 64.7 258 30.2


User provided reference genes

Program Settings