Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 4.7e-199 698.0 439 100.0
SEGI_39817 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 9.6e-51 205.3 185 61.6
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 4.8e-18 96.7 285 28.8
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 5.3e-17 93.2 321 29.3
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 7.0e-17 92.8 310 30.3
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 9.1e-17 92.4 297 30.6
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 9.1e-17 92.4 298 32.6
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.6e-16 91.7 308 31.8
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 3.5e-16 90.5 317 30.0
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 4.5e-16 90.1 316 29.1
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 5.9e-16 89.7 295 30.5
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 7.7e-16 89.4 318 29.9
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.3e-15 88.6 299 30.8
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.7e-15 88.2 294 31.3
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 1.7e-15 88.2 295 31.5
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 2.9e-15 87.4 313 30.4
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 3.8e-15 87.0 295 31.2
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 6.5e-15 86.3 303 30.4
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.5e-14 85.1 294 31.6
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.9e-14 84.7 314 28.3
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 1.9e-14 84.7 292 30.5
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.9e-14 84.7 313 29.4
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 3.2e-14 84.0 283 28.3
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 4.2e-14 83.6 281 31.0
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 5.5e-14 83.2 311 27.0
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 9.4e-14 82.4 302 29.8
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 9.4e-14 82.4 311 28.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.6e-13 81.6 297 29.6
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.1e-13 81.3 291 29.9
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 2.7e-13 80.9 312 29.2
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 4.7e-13 80.1 306 28.8
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 8.0e-13 79.3 283 31.1
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 8.0e-13 79.3 303 28.4
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 1.0e-12 79.0 308 30.2
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 1.4e-12 78.6 297 29.6
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.8e-12 78.2 297 28.3
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.3e-12 77.8 295 30.5
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 3.0e-12 77.4 218 31.7
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 4.0e-12 77.0 309 27.5
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 4.0e-12 77.0 311 28.3
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 6.7e-12 76.3 218 32.1
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 6.7e-12 76.3 218 32.1
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 6.7e-12 76.3 289 28.4
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 8.8e-12 75.9 323 27.2
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.1e-11 75.5 302 26.2
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 1.1e-11 75.5 309 28.2
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.5e-11 75.1 298 27.2
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.5e-11 75.1 308 30.5
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.5e-11 75.1 281 31.0
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.5e-11 75.1 285 29.1
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.6e-11 74.3 305 30.2
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 2.6e-11 74.3 291 27.5
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 3.3e-11 73.9 318 25.8
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 3.3e-11 73.9 320 32.2
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 4.4e-11 73.6 301 27.6
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 5.7e-11 73.2 292 27.7
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 5.7e-11 73.2 322 28.0
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 7.5e-11 72.8 171 33.3
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 9.7e-11 72.4 302 26.2
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.3e-10 72.0 311 28.3
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 2.2e-10 71.2 311 28.3
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 2.8e-10 70.9 311 29.6
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 4.8e-10 70.1 316 30.7
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.3e-10 69.7 297 25.6
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 6.3e-10 69.7 320 28.4
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 1.4e-09 68.6 299 28.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.4e-09 68.6 299 28.4
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 2.4e-09 67.8 298 25.8
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 2.4e-09 67.8 311 28.0
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 3.1e-09 67.4 297 30.3
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.1e-09 67.4 311 28.3
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 4.1e-09 67.0 296 28.4
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 4.1e-09 67.0 317 28.7
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 4.1e-09 67.0 310 25.5
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 5.3e-09 66.6 301 26.2
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 1.2e-08 65.5 321 29.3
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.6e-08 65.1 320 26.9
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.6e-08 65.1 299 28.4
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 2.0e-08 64.7 194 30.4
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 3.5e-08 63.9 310 28.1
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 3.5e-08 63.9 296 27.4
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 4.5e-08 63.5 219 31.1
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 7.7e-08 62.8 285 25.6
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 2.9e-07 60.8 300 27.7
Gohir.D13G205300 Gossypium hirsutum HOM05D001903 ORTHO05D001847 6.5e-07 59.7 108 31.5
CSS0008952 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 8.5e-07 59.3 128 31.2
Gorai.013G234200 Gossypium raimondii HOM05D001903 ORTHO05D001847 8.5e-07 59.3 108 31.5
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 1.5e-06 58.5 95 36.8
Gohir.A13G199800 Gossypium hirsutum HOM05D001903 ORTHO05D001847 1.9e-06 58.2 108 30.6
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 2.5e-06 57.8 243 28.0
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 3.2e-06 57.4 81 42.0
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 3.2e-06 57.4 312 29.5
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 3.2e-06 57.4 348 26.4
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.2e-06 57.4 34 67.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.2e-06 57.0 117 28.2
BcaB05g22864 Brassica carinata HOM05D001903 ORTHO05D001847 7.2e-06 56.2 75 37.3
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 7.2e-06 56.2 84 42.9
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 7.2e-06 56.2 88 40.9
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 7.2e-06 56.2 283 26.1
Thecc.06G022200 Theobroma cacao HOM05D001903 ORTHO05D001847 7.2e-06 56.2 118 38.1


User provided reference genes

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