Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 2.8e-185 651.7 314 100.0
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.7e-78 297.0 159 88.1
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 6.6e-78 295.0 159 87.4
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.9e-77 293.5 159 87.4
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 7.3e-77 291.6 159 84.9
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.2e-76 290.8 161 84.5
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.2e-76 290.8 161 84.5
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.2e-76 290.8 162 84.6
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.2e-76 290.8 159 85.5
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 1.6e-76 290.4 159 85.5
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.6e-76 290.4 161 85.1
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.1e-76 290.0 161 84.5
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 2.1e-76 290.0 161 84.5
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 2.1e-76 290.0 159 86.2
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 2.8e-76 289.7 161 84.5
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 2.8e-76 289.7 161 84.5
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 2.8e-76 289.7 159 86.2
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 3.6e-76 289.3 159 84.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 6.2e-76 288.5 161 84.5
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 6.2e-76 288.5 159 84.3
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 8.1e-76 288.1 159 84.9
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 1.1e-75 287.7 161 84.5
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.1e-75 287.7 161 83.9
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 1.1e-75 287.7 159 84.9
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 1.4e-75 287.3 161 83.2
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-75 287.3 159 84.9
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.4e-75 287.3 159 85.5
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.4e-75 287.3 159 84.9
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.8e-75 287.0 161 82.6
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 2.3e-75 286.6 161 84.5
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.3e-75 286.6 161 83.2
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 3.1e-75 286.2 161 83.9
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 4.0e-75 285.8 161 82.0
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 4.0e-75 285.8 159 84.3
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.2e-75 285.4 159 84.3
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 5.2e-75 285.4 161 82.6
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.8e-75 285.0 161 83.2
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 6.8e-75 285.0 159 84.3
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 6.8e-75 285.0 159 84.3
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 6.8e-75 285.0 162 82.7
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 8.9e-75 284.6 161 83.2
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 8.9e-75 284.6 159 84.3
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 1.2e-74 284.3 159 82.4
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 1.2e-74 284.3 161 82.6
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.2e-74 284.3 161 82.6
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.2e-74 284.3 159 84.9
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 1.5e-74 283.9 161 81.4
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.5e-74 283.9 161 81.4
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.5e-74 283.9 161 81.4
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.5e-74 283.9 161 83.2
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 1.5e-74 283.9 161 83.9
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 2.0e-74 283.5 162 81.5
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 2.6e-74 283.1 159 84.3
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 3.4e-74 282.7 166 80.7
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 4.4e-74 282.3 159 83.0
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 4.4e-74 282.3 159 84.3
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.4e-74 282.3 161 82.6
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 4.4e-74 282.3 160 82.5
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 4.4e-74 282.3 161 82.0
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.4e-74 282.3 162 82.1
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 5.8e-74 282.0 159 81.8
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 5.8e-74 282.0 159 82.4
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 7.6e-74 281.6 161 82.0
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 7.6e-74 281.6 162 82.7
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 7.6e-74 281.6 159 82.4
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 9.9e-74 281.2 161 79.5
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 9.9e-74 281.2 159 81.8
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.2e-73 280.0 162 81.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.2e-73 280.0 161 81.4
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.2e-73 280.0 161 80.1
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 2.9e-73 279.6 161 79.5
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 3.7e-73 279.3 162 80.9
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 4.9e-73 278.9 161 78.9
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.9e-73 278.9 161 79.5
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 6.4e-73 278.5 160 81.9
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 6.4e-73 278.5 162 81.5
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 8.4e-73 278.1 161 80.1
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 8.4e-73 278.1 161 81.4
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 8.4e-73 278.1 161 82.0
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 8.4e-73 278.1 160 80.6
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.1e-72 277.7 161 79.5
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.1e-72 277.7 161 79.5
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.1e-72 277.7 164 79.3
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.1e-72 277.7 161 81.4
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 1.4e-72 277.3 161 82.0
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.4e-72 277.3 155 82.6
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.9e-72 276.9 160 81.2
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.9e-72 276.9 161 78.3
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 2.4e-72 276.6 161 81.4
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 3.2e-72 276.2 161 79.5
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 4.1e-72 275.8 160 81.2
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 5.4e-72 275.4 162 80.9
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 7.1e-72 275.0 161 76.4
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 9.2e-72 274.6 162 79.0
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.2e-71 274.2 161 79.5
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 2.7e-71 273.1 162 79.6
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 79.0
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 79.0
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 79.0
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 79.0
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 79.0
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 77.8
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 3.5e-71 272.7 178 75.3
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 3.5e-71 272.7 162 79.0
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 4.6e-71 272.3 162 78.4
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 6.0e-71 271.9 162 78.4
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 1.0e-70 271.2 162 78.4
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.3e-70 270.8 162 78.4
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.3e-70 270.8 162 78.4
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.3e-70 270.8 162 78.4
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.7e-70 270.4 162 79.0
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 1.7e-70 270.4 162 78.4
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-70 270.0 162 78.4
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 2.3e-70 270.0 151 82.1
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 3.0e-70 269.6 159 79.9
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 3.9e-70 269.2 162 77.8
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 5.1e-70 268.9 162 78.4
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 5.1e-70 268.9 162 78.4
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 5.1e-70 268.9 162 78.4
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 5.1e-70 268.9 162 78.4
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 5.1e-70 268.9 162 78.4
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 5.1e-70 268.9 160 78.1
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 5.1e-70 268.9 162 79.0
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 6.6e-70 268.5 160 78.1
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 8.6e-70 268.1 165 78.8
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 1.1e-69 267.7 162 77.8
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 1.1e-69 267.7 159 78.6
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.1e-69 267.7 199 68.8
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.9e-69 266.9 200 66.5
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 2.5e-69 266.5 162 77.8
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.2e-68 264.2 148 84.5
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.2e-68 264.2 144 86.1
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.4e-67 260.8 145 83.4
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 2.4e-67 260.0 161 73.3
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 3.1e-67 259.6 187 67.4
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.1e-67 259.6 144 84.7
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 4.0e-67 259.2 162 77.8
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 5.2e-67 258.8 161 72.7
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 2.0e-66 256.9 150 80.7
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 2.0e-66 256.9 151 78.1
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.2e-65 253.4 145 82.1
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.1e-64 251.1 146 77.4
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 3.5e-63 246.1 146 79.5
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 3.5e-63 246.1 143 80.4
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 4.6e-63 245.7 145 79.3
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.0e-63 245.4 134 85.1
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 3.0e-62 243.0 154 77.9
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.9e-61 240.4 161 65.2
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.9e-61 240.4 153 69.9
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 2.5e-61 240.0 162 70.4
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 3.6e-60 236.1 153 74.5
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 1.8e-59 233.8 253 49.8
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 6.9e-59 231.9 127 86.6
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.4e-58 229.2 127 85.0
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.4e-56 222.2 156 70.5
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 9.3e-56 221.5 127 81.1
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 6.0e-55 218.8 127 78.7
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 8.7e-54 214.9 167 58.1
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.3e-53 212.6 121 80.2
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.8e-50 202.2 154 66.9
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 4.6e-47 192.6 113 80.5
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 2.0e-42 177.2 129 69.8
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 3.8e-41 172.9 96 85.4
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.9e-40 170.6 97 84.5
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.2e-39 167.9 131 67.9
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.1e-37 161.4 90 83.3
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 3.1e-27 126.7 70 80.0
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 6.9e-27 125.6 72 80.6
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.0e-25 121.7 65 86.2
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 1.2e-23 114.8 64 82.8
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 7.4e-21 105.5 81 63.0
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 4.1e-19 99.8 85 60.0
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.2e-15 88.2 45 82.2
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 1.6e-10 71.2 114 39.5
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.2e-09 67.4 38 81.6
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 1.5e-08 64.7 31 90.3
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.7e-07 60.5 36 69.4
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 6.1e-07 59.3 30 90.0


User provided reference genes

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