Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.2e-79 299.7 141 100.0
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.9e-25 119.0 88 59.1
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.8e-25 118.6 84 61.9
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 6.5e-25 117.9 91 54.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 6.5e-25 117.9 101 53.5
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.1e-24 117.1 86 59.3
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-24 117.1 86 59.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.1e-24 117.1 86 59.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.4e-24 116.7 100 51.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.4e-24 116.7 86 59.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.4e-24 116.7 86 59.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.2e-24 115.5 100 54.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 4.2e-24 115.2 86 58.1
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 4.2e-24 115.2 101 52.5
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.5e-24 114.8 82 61.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 7.2e-24 114.4 86 58.1
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 7.2e-24 114.4 84 58.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 7.2e-24 114.4 84 58.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 7.2e-24 114.4 86 57.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 9.4e-24 114.0 84 58.3
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 9.4e-24 114.0 101 52.5
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 9.4e-24 114.0 86 59.3
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 9.4e-24 114.0 84 58.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 9.4e-24 114.0 84 57.1
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.2e-23 113.6 86 58.1
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.2e-23 113.6 88 58.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.2e-23 113.6 88 56.8
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-23 113.2 86 55.8
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-23 113.2 86 55.8
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-23 113.2 88 58.0
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.6e-23 113.2 84 58.3
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.6e-23 113.2 86 58.1
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.1e-23 112.8 86 58.1
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.1e-23 112.8 86 57.0
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.1e-23 112.8 88 60.2
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.1e-23 112.8 86 57.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.7e-23 112.5 86 57.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.7e-23 112.5 86 57.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.7e-23 112.5 84 58.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-23 112.1 86 55.8
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.6e-23 112.1 86 57.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.6e-23 112.1 86 59.3
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.6e-23 112.1 86 58.1
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.6e-23 112.1 86 57.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.6e-23 111.7 86 55.8
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.6e-23 111.7 86 58.1
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.6e-23 111.7 86 58.1
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 4.6e-23 111.7 86 58.1
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.6e-23 111.7 86 57.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 4.6e-23 111.7 86 57.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.1e-23 111.3 86 55.8
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 6.1e-23 111.3 82 57.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 6.1e-23 111.3 86 58.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 6.1e-23 111.3 86 57.0
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 6.1e-23 111.3 84 57.1
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.1e-23 111.3 86 58.1
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.9e-23 110.9 86 55.8
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 7.9e-23 110.9 86 55.8
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 7.9e-23 110.9 86 57.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 7.9e-23 110.9 86 53.5
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 7.9e-23 110.9 101 51.5
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-22 110.5 86 54.7
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.4e-22 110.2 86 55.8
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.4e-22 110.2 87 57.5
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-22 110.2 100 52.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-22 110.2 100 52.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.4e-22 110.2 86 57.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.4e-22 110.2 88 55.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.4e-22 110.2 86 58.1
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.4e-22 110.2 100 52.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.4e-22 110.2 84 57.1
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.4e-22 110.2 85 54.1
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-22 109.8 86 54.7
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.8e-22 109.8 86 54.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.8e-22 109.8 86 55.8
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.8e-22 109.8 86 55.8
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.8e-22 109.8 86 54.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.8e-22 109.8 84 56.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.3e-22 109.4 86 55.8
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.3e-22 109.4 86 55.8
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.0e-22 109.0 86 57.0
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.0e-22 109.0 85 56.5
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 3.9e-22 108.6 100 51.0
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-22 108.6 100 51.0
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-22 108.6 100 51.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-22 108.6 100 51.0
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-22 108.6 100 51.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.9e-22 108.6 86 53.5
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 5.1e-22 108.2 86 53.5
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 5.1e-22 108.2 86 53.5
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.1e-22 108.2 82 56.1
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 5.1e-22 108.2 86 54.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 6.7e-22 107.8 86 57.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.7e-22 107.8 86 52.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 6.7e-22 107.8 86 53.5
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 8.8e-22 107.5 86 54.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 8.8e-22 107.5 82 56.1
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 8.8e-22 107.5 86 52.3
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-21 107.1 86 55.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.5e-21 106.7 75 60.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.5e-21 106.7 86 55.8
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.5e-21 106.7 82 54.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.6e-21 105.9 82 57.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 3.3e-21 105.5 98 50.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 4.4e-21 105.1 86 52.3
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 4.4e-21 105.1 86 55.8
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 5.7e-21 104.8 86 53.5
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.7e-21 104.8 86 53.5
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 9.7e-21 104.0 101 45.5
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.3e-20 103.6 91 51.6
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.3e-20 103.6 78 57.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.3e-20 103.6 86 54.7
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.7e-20 103.2 86 52.3
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.7e-20 103.2 86 52.3
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.8e-20 102.4 86 51.2
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.8e-20 102.4 86 52.3
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 6.3e-20 101.3 93 49.5
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.3e-20 101.3 88 52.3
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-19 100.5 84 53.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.1e-19 100.5 91 49.5
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-19 100.5 91 50.5
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-19 100.1 91 48.4
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 2.4e-19 99.4 82 54.9
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.1e-19 99.0 86 52.3
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-19 99.0 86 52.3
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-19 99.0 86 52.3
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.1e-19 99.0 86 52.3
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 3.1e-19 99.0 86 52.3
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 3.1e-19 99.0 91 49.5
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-19 98.6 96 46.9
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 4.1e-19 98.6 96 46.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 5.3e-19 98.2 86 48.8
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 6.9e-19 97.8 86 52.3
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 9.1e-19 97.4 88 47.7
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.2e-18 97.1 86 48.8
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-18 96.7 83 48.2
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.5e-18 96.7 86 47.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-18 96.7 86 47.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.0e-18 96.3 82 53.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.4e-18 95.5 91 48.4
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.7e-17 93.2 65 60.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 2.2e-17 92.8 86 47.7
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 8.5e-17 90.9 82 47.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 6.7e-14 81.3 86 46.5
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.3e-13 79.0 84 38.1
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 5.7e-13 78.2 49 67.3
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 5.7e-13 78.2 49 67.3
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.7e-13 77.4 95 35.8
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 9.7e-13 77.4 50 64.0
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.3e-12 77.0 80 45.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.2e-12 76.3 86 41.9
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.2e-12 76.3 86 41.9
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 6.3e-12 74.7 50 62.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-11 73.9 82 43.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-11 73.2 144 32.6
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.1e-11 72.0 52 59.6
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.6e-10 69.3 51 60.8
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.6e-10 69.3 50 54.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 7.7e-10 67.8 40 70.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.1e-08 63.9 85 31.8
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.9e-08 63.2 74 37.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 2.5e-08 62.8 77 40.3
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.5e-08 62.8 50 58.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 2.1e-07 59.7 55 40.0
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.1e-07 58.2 82 32.9
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.1e-07 58.2 67 38.8
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 5.2e-06 55.1 52 44.2


User provided reference genes

Program Settings