Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.1e-78 296.6 157 100.0
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 4.2e-49 198.4 105 88.6
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 2.1e-48 196.1 104 87.5
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 7.9e-48 194.1 104 86.5
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 7.9e-48 194.1 104 85.6
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 1.0e-47 193.7 104 86.5
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 1.0e-47 193.7 104 86.5
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 1.0e-47 193.7 104 86.5
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 1.0e-47 193.7 104 86.5
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 3.0e-47 192.2 104 85.6
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 3.9e-47 191.8 107 84.1
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 5.1e-47 191.4 109 82.6
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 5.1e-47 191.4 97 91.8
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 8.8e-47 190.7 104 86.5
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 8.8e-47 190.7 104 85.6
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.0e-46 189.5 109 81.7
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 4.4e-46 188.3 97 90.7
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 4.4e-46 188.3 97 90.7
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 5.7e-46 188.0 97 90.7
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.4e-46 187.6 97 90.7
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.3e-45 186.8 109 79.8
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 1.3e-45 186.8 97 89.7
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 1.7e-45 186.4 97 88.7
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 1.7e-45 186.4 109 80.7
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.7e-45 186.4 97 87.6
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.7e-45 186.4 97 87.6
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.7e-45 186.4 97 87.6
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.7e-45 186.4 97 89.7
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.2e-45 186.0 97 89.7
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.2e-45 186.0 97 88.7
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 2.2e-45 186.0 97 86.6
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 2.2e-45 186.0 97 88.7
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 2.8e-45 185.7 97 87.6
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 2.8e-45 185.7 100 85.0
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 3.7e-45 185.3 97 88.7
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 4.8e-45 184.9 96 89.6
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 4.8e-45 184.9 108 80.6
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 4.8e-45 184.9 97 88.7
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 6.3e-45 184.5 108 80.6
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 8.2e-45 184.1 97 86.6
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 8.2e-45 184.1 108 80.6
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 8.2e-45 184.1 108 80.6
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 1.1e-44 183.7 108 80.6
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.1e-44 183.7 108 79.6
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.4e-44 183.3 97 88.7
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 1.4e-44 183.3 97 87.6
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 1.4e-44 183.3 96 88.5
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.8e-44 183.0 97 87.6
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 1.8e-44 183.0 100 85.0
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 2.4e-44 182.6 97 86.6
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 2.4e-44 182.6 108 79.6
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.4e-44 182.6 97 87.6
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.4e-44 182.6 97 87.6
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 3.1e-44 182.2 107 82.2
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 3.1e-44 182.2 96 87.5
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 4.1e-44 181.8 97 87.6
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 4.1e-44 181.8 97 86.6
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 4.1e-44 181.8 100 86.0
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 5.3e-44 181.4 97 87.6
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 5.3e-44 181.4 97 87.6
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 5.3e-44 181.4 97 87.6
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 5.3e-44 181.4 107 81.3
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 5.3e-44 181.4 97 86.6
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 5.3e-44 181.4 97 88.7
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 5.3e-44 181.4 97 87.6
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 6.9e-44 181.0 97 86.6
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 6.9e-44 181.0 97 87.6
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 6.9e-44 181.0 97 87.6
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 6.9e-44 181.0 97 85.6
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 6.9e-44 181.0 97 85.6
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 9.1e-44 180.6 107 82.2
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 9.1e-44 180.6 97 86.6
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 1.2e-43 180.3 108 78.7
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 1.2e-43 180.3 97 86.6
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 1.2e-43 180.3 97 86.6
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 1.2e-43 180.3 97 87.6
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.2e-43 180.3 97 85.6
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 1.2e-43 180.3 97 88.7
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 1.2e-43 180.3 97 87.6
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 1.5e-43 179.9 108 78.7
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 1.5e-43 179.9 108 78.7
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.5e-43 179.9 97 87.6
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.5e-43 179.9 104 81.7
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-43 179.9 97 86.6
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 1.5e-43 179.9 97 86.6
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 2.6e-43 179.1 97 85.6
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 2.6e-43 179.1 97 86.6
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.6e-43 179.1 97 85.6
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.6e-43 179.1 96 86.5
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 3.4e-43 178.7 96 86.5
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 3.4e-43 178.7 97 85.6
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 3.4e-43 178.7 97 85.6
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 4.5e-43 178.3 97 85.6
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.9e-43 177.9 97 85.6
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 5.9e-43 177.9 97 85.6
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 7.7e-43 177.6 95 88.4
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 1.7e-42 176.4 97 84.5
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 2.2e-42 176.0 97 85.6
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 2.2e-42 176.0 97 85.6
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 2.2e-42 176.0 96 85.4
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 2.9e-42 175.6 97 85.6
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 2.9e-42 175.6 96 84.4
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 3.8e-42 175.3 95 84.2
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 3.8e-42 175.3 108 76.9
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 2.5e-41 172.6 95 84.2
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 4.7e-40 168.3 97 82.5
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 7.9e-40 167.5 96 80.2
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 1.0e-39 167.2 96 82.3
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.4e-39 166.8 88 87.5
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 3.3e-38 162.2 95 80.0
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 3.3e-38 162.2 97 80.4
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 3.3e-38 162.2 97 80.4
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 3.3e-38 162.2 97 80.4
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 2.8e-37 159.1 96 78.1
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.3e-37 157.9 93 79.6
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 2.0e-35 152.9 97 78.4
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 5.9e-35 151.4 97 77.3
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 5.9e-35 151.4 85 82.4
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 3.8e-34 148.7 96 72.9
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 5.0e-34 148.3 96 70.8
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 3.2e-33 145.6 90 78.9
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-30 136.7 71 90.1
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 4.4e-30 135.2 66 95.5
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 1.7e-29 133.3 81 80.2
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.3e-29 131.3 97 67.0
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 7.0e-28 127.9 104 63.5
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-27 127.1 80 75.0
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-26 123.2 65 86.2
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-26 123.2 65 86.2
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-25 120.6 62 88.7
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 9.4e-25 117.5 110 55.5
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-21 107.1 89 60.7
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 5.4e-20 101.7 52 90.4
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.0e-18 95.1 56 78.6
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.2e-17 92.0 51 84.3
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-15 87.4 80 56.2
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 4.9e-13 78.6 39 94.9
Atru.chr7.305 Acer truncatum HOM05D003336 ORTHO05D003807 1.3e-10 70.5 65 55.4
CSS0049342 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.0e-10 68.6 65 55.4
C03p84370 Brassica napus HOM05D000924 ORTHO05D001209 8.6e-10 67.8 41 70.7
Atru.chr7.309 Acer truncatum HOM05D003336 ORTHO05D003807 5.6e-09 65.1 61 54.1
A08p15930 Brassica napus HOM05D000924 ORTHO05D001209 3.0e-07 59.3 49 59.2


User provided reference genes

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