Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.8e-168 595.9 304 100.0
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 9.8e-87 324.3 241 65.1
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.4e-85 320.5 250 62.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 4.1e-85 318.9 267 57.7
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 9.2e-85 317.8 264 59.1
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.7e-84 316.2 253 58.5
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 7.8e-84 314.7 262 59.9
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 7.8e-84 314.7 250 60.4
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 7.8e-84 314.7 250 60.4
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.3e-83 313.9 262 58.8
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.7e-83 313.5 250 59.2
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.7e-83 313.5 245 60.8
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.3e-83 313.2 269 57.6
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 5.1e-83 312.0 267 56.2
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.9e-82 310.1 245 60.4
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.6e-82 308.5 245 60.4
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 7.3e-82 308.1 267 59.9
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 7.3e-82 308.1 245 60.4
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 7.3e-82 308.1 260 58.5
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 2.8e-81 306.2 256 58.6
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 3.6e-81 305.8 255 59.2
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 3.6e-81 305.8 245 60.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.7e-81 305.4 253 60.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.7e-81 305.4 253 60.1
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 4.7e-81 305.4 241 59.8
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 6.2e-81 305.1 262 59.2
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 6.2e-81 305.1 278 56.5
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 8.1e-81 304.7 247 59.1
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 8.1e-81 304.7 241 61.0
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 8.1e-81 304.7 256 57.4
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.4e-80 303.9 261 58.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 5.2e-80 302.0 261 56.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 6.8e-80 301.6 260 56.5
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 8.9e-80 301.2 280 56.1
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.5e-79 300.4 265 54.7
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.5e-79 300.4 248 56.5
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 1.5e-79 300.4 241 58.9
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.6e-79 299.7 271 57.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 4.4e-79 298.9 259 56.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 5.8e-79 298.5 240 59.6
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 7.6e-79 298.1 242 59.9
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.7e-78 297.0 242 61.2
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.2e-78 296.6 264 56.4
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.2e-78 296.6 240 58.3
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 4.9e-78 295.4 241 57.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 6.4e-78 295.0 245 58.4
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.1e-77 294.3 248 58.1
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.4e-77 293.9 274 54.7
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.2e-77 292.7 264 53.8
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.1e-77 292.4 236 59.7
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 7.1e-77 291.6 249 58.2
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 7.1e-77 291.6 283 53.0
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.1e-77 291.6 264 53.8
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 9.2e-77 291.2 240 59.2
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 9.2e-77 291.2 267 55.1
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 9.2e-77 291.2 256 55.9
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-76 290.8 283 52.7
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.2e-76 290.8 283 52.7
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-76 290.4 283 53.4
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.6e-76 290.4 256 56.2
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.6e-76 290.4 259 56.4
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.1e-76 290.0 298 50.7
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.1e-76 290.0 262 56.1
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.7e-76 289.7 244 57.0
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 4.6e-76 288.9 261 55.2
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.6e-76 288.9 253 54.9
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.3e-75 286.6 240 56.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.0e-75 286.2 266 56.0
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 3.0e-75 286.2 242 59.1
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.9e-75 285.8 236 58.9
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 8.6e-75 284.6 283 51.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 8.6e-75 284.6 246 56.9
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.1e-74 284.3 236 59.7
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.5e-74 283.9 254 55.1
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.9e-74 283.5 264 55.3
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.9e-74 283.5 243 56.0
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 3.3e-74 282.7 267 53.9
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 4.3e-74 282.3 283 50.9
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.3e-74 282.3 241 57.3
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 4.3e-74 282.3 243 55.6
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.2e-73 280.8 218 60.1
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.1e-73 278.1 244 54.9
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.4e-72 277.3 239 54.8
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.8e-72 276.9 250 56.0
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.8e-72 276.9 218 59.6
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.8e-72 276.9 245 55.1
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 5.2e-72 275.4 261 55.6
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 8.9e-72 274.6 248 56.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.5e-71 273.9 228 58.3
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-70 270.8 262 53.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.3e-70 270.8 235 56.6
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.9e-70 269.6 222 57.7
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 6.4e-70 268.5 270 53.7
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 8.4e-70 268.1 251 53.4
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.9e-66 256.9 226 55.3
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-66 256.5 231 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.1e-64 251.1 262 51.1
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 7.6e-63 245.0 303 46.9
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 7.1e-61 238.4 264 48.1
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.2e-60 237.7 257 47.5
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 6.0e-60 235.3 231 50.6
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.3e-59 234.2 183 61.7
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.7e-59 233.8 193 59.6
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.7e-59 233.8 227 51.1
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.3e-58 229.2 226 48.7
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.3e-57 227.6 294 43.2
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 8.1e-57 224.9 162 62.3
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.7e-54 217.2 175 58.3
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.9e-54 216.5 254 46.1
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.8e-51 207.2 285 42.1
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 4.5e-47 192.6 186 51.6
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.4e-45 187.6 251 39.4
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 2.7e-44 183.3 237 46.4
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.0e-43 179.9 149 57.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 4.1e-40 169.5 223 42.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 9.0e-40 168.3 147 53.7
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.3e-38 164.5 228 43.4
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.9e-36 155.2 112 61.6
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 3.8e-30 136.3 109 58.7
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 8.8e-27 125.2 133 47.4
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.1e-24 118.2 192 34.9
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 4.5e-23 112.8 82 57.3
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 4.5e-23 112.8 82 56.1
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 4.5e-23 112.8 128 46.9
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 3.8e-22 109.8 82 56.1
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 3.6e-20 103.2 83 55.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 6.7e-19 99.0 169 33.1
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.6e-18 97.1 84 54.8
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 9.1e-16 88.6 80 58.8
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.2e-15 88.2 156 35.3
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 2.6e-10 70.5 70 48.6
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-09 67.8 60 55.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 4.8e-09 66.2 81 42.0
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.8e-09 66.2 81 42.0
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.8e-09 66.2 81 42.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 8.2e-09 65.5 61 55.7
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.2e-09 65.5 81 42.0
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.8e-08 64.3 81 40.7
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 4.1e-08 63.2 204 25.5
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 5.3e-08 62.8 86 41.9
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 4.5e-07 59.7 52 53.8


User provided reference genes

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