Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39801 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.1e-111 406.8 231 100.0
SEGI_30342 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.0e-96 355.5 192 94.8
SEGI_22916 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 4.2e-21 105.9 163 44.2
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.3e-18 96.3 228 36.4
SEGI_16110 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.1e-17 93.6 178 42.7
SEGI_36083 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 8.2e-17 91.7 213 41.3
SEGI_17214 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.8e-16 90.5 181 43.1
SEGI_33454 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 5.3e-16 89.0 164 43.3
SEGI_39020 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.4e-15 86.3 201 40.8
SEGI_14085 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.9e-14 83.2 191 40.8
GSVIVG01036543001 Vitis vinifera HOM05D003328 ORTHO05D003722 2.1e-12 77.0 204 35.8
MBI16_g07038_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 1.3e-11 74.3 207 33.3
FAN09G3792 Fragaria x ananassa HOM05D003328 ORTHO05D003722 3.0e-11 73.2 141 36.9
FAN05G0575 Fragaria x ananassa HOM05D003328 ORTHO05D003722 5.1e-11 72.4 141 36.9
FAN02G1536 Fragaria x ananassa HOM05D003328 ORTHO05D003722 3.3e-10 69.7 141 35.5
Sabra04G0071400 Salix brachista HOM05D003328 ORTHO05D003722 3.3e-10 69.7 197 32.5
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 4.3e-10 69.3 198 33.3
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 5.7e-10 68.9 198 33.3
FvH4_6g46340 Fragaria vesca HOM05D003328 ORTHO05D003722 7.4e-10 68.6 141 36.2
FAN14G4737 Fragaria x ananassa HOM05D003328 ORTHO05D003722 7.4e-10 68.6 141 36.2
Glyma.19G035700 Glycine max HOM05D003328 ORTHO05D003722 7.4e-10 68.6 170 32.9
Gohir.A07G179300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 7.4e-10 68.6 144 35.4
PSO782G2223 Papaver somniferum HOM05D003328 ORTHO05D003722 7.4e-10 68.6 144 32.6
Potri.017G100600 Populus trichocarpa HOM05D003328 ORTHO05D003722 7.4e-10 68.6 201 32.8
MBI19_g00148_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 9.7e-10 68.2 199 30.7
Manes.02G059700 Manihot esculenta HOM05D003328 ORTHO05D003722 1.3e-09 67.8 143 35.0
TAR629G1921 Trochodendron aralioides HOM05D003328 ORTHO05D003722 1.6e-09 67.4 204 31.9
PSO063G5324 Papaver somniferum HOM05D003328 ORTHO05D003722 2.2e-09 67.0 152 30.9
Actinidia18081 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.8e-09 66.6 191 33.0
Psat3g203200 Pisum sativum HOM05D003328 ORTHO05D003722 2.8e-09 66.6 181 31.5
SEGI_36274 Sequoiadendron giganteum HOM05D003105 ORTHO05D003471 3.7e-09 66.2 168 32.7
vmacro05612 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 3.7e-09 66.2 197 31.5
SEGI_16578 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 4.8e-09 65.9 159 34.6
CiPaw.03G082700 Carya illinoinensis HOM05D003328 ORTHO05D003722 6.3e-09 65.5 196 33.2
CsaV3_4G010050 Cucumis sativus L. HOM05D003328 ORTHO05D003722 6.3e-09 65.5 145 35.2
HanXRQChr15g0489341 Helianthus annuus HOM05D003328 ORTHO05D003722 6.3e-09 65.5 192 32.3
AL6G26620 Arabidopsis lyrata HOM05D003328 ORTHO05D003722 8.2e-09 65.1 154 35.1
Phvul.004G042700 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 8.2e-09 65.1 185 30.8
Prupe.3G248700 Prunus persica HOM05D003328 ORTHO05D003722 8.2e-09 65.1 181 32.6
Actinidia26271 Actinidia chinensis HOM05D003328 ORTHO05D003722 1.1e-08 64.7 190 31.1
CSS0050346 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 1.1e-08 64.7 218 33.5
Dinv33868 Davidia involucrata HOM05D003328 ORTHO05D003722 1.1e-08 64.7 192 30.2
FvH4_3g07791 Fragaria vesca HOM05D000859 ORTHO05D000668 1.1e-08 64.7 106 38.7
Rhsim08G0077500 Rhododendron simsii HOM05D003328 ORTHO05D003722 1.1e-08 64.7 159 32.7
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.4e-08 64.3 141 34.0
Glyma.13G051700 Glycine max HOM05D003328 ORTHO05D003722 1.4e-08 64.3 186 31.2
Glyma.18G274200 Glycine max HOM05D003328 ORTHO05D003722 1.4e-08 64.3 208 34.1
ClCG07G016060 Citrullus lanatus HOM05D003328 ORTHO05D003722 1.8e-08 63.9 156 35.3
Glyma.19G035600 Glycine max HOM05D003328 ORTHO05D003722 1.8e-08 63.9 186 29.6
Lj4A124T57 Lonicera japonica HOM05D003328 ORTHO05D003722 1.8e-08 63.9 125 36.8
CSS0002115 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 2.4e-08 63.5 177 30.5
CSS0026022 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 2.4e-08 63.5 177 30.5
Medtr7g016950 Medicago truncatula HOM05D003328 ORTHO05D003722 2.4e-08 63.5 123 33.3
FAN11G3578 Fragaria x ananassa HOM05D000298 ORTHO05D001098 3.1e-08 63.2 102 38.2
FAN16G0283 Fragaria x ananassa HOM05D000298 ORTHO05D001098 3.1e-08 63.2 102 38.2
Glyma.19G034900 Glycine max HOM05D003328 ORTHO05D003722 3.1e-08 63.2 143 34.3
Hma1.2p1_1837F.1_g304780 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 3.1e-08 63.2 194 31.4
Rhsim08G0077700 Rhododendron simsii HOM05D003328 ORTHO05D003722 3.1e-08 63.2 223 29.6
RcHm_v2.0_Chr2g0164841 Rosa chinensis HOM05D003328 ORTHO05D003722 3.1e-08 63.2 166 31.3
RcHm_v2.0_Chr5g0010771 Rosa chinensis HOM05D000859 ORTHO05D000668 3.1e-08 63.2 104 37.5
TPR.G23379 Trifolium pratense HOM05D003328 ORTHO05D003722 3.1e-08 63.2 185 30.3
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 4.1e-08 62.8 172 34.3
FAN25G2164 Fragaria x ananassa HOM05D000298 ORTHO05D000668 4.1e-08 62.8 102 38.2
Lj1g0001231 Lotus japonicus HOM05D003328 ORTHO05D003722 4.1e-08 62.8 176 32.4
PGR004G1231 Punica granatum HOM05D003328 ORTHO05D003722 4.1e-08 62.8 117 39.3
MBI02_g30890_MAGBIO Magnolia biondii HOM05D000859 ORTHO05D000668 5.3e-08 62.4 127 32.3
AUR62023157 Chenopodium quinoa HOM05D003328 ORTHO05D003722 6.9e-08 62.0 173 31.8
MELO3C018892.2 Cucumis melo HOM05D003328 ORTHO05D003722 6.9e-08 62.0 145 33.8
Gohir.D07G186200 Gossypium hirsutum HOM05D003328 ORTHO05D003722 6.9e-08 62.0 144 34.0
Gorai.001G206700 Gossypium raimondii HOM05D003328 ORTHO05D003722 6.9e-08 62.0 144 34.0
Potri.004G114300 Populus trichocarpa HOM05D003328 ORTHO05D003722 6.9e-08 62.0 179 33.0
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 6.9e-08 62.0 136 33.8
CAN.G1119.7 Capsicum annuum HOM05D000859 ORTHO05D000668 9.0e-08 61.6 108 33.3
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 9.0e-08 61.6 174 33.9
Duzib138G1365 Durio zibethinus HOM05D003328 ORTHO05D003722 9.0e-08 61.6 189 32.3
AT5G15780 Arabidopsis thaliana HOM05D003328 ORTHO05D003722 1.5e-07 60.8 161 35.4
Solyc03g046580.1 Solanum lycopersicum HOM05D003328 ORTHO05D003722 1.5e-07 60.8 124 37.1
Carub.0006s1393 Capsella rubella HOM05D003328 ORTHO05D003722 2.0e-07 60.5 171 34.5
Manes.03G101100 Manihot esculenta HOM05D000859 ORTHO05D000668 2.0e-07 60.5 150 32.0
unitig_32.g10694 Utricularia gibba HOM05D000859 ORTHO05D000668 2.0e-07 60.5 126 32.5
Actinidia17606 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.6e-07 60.1 198 29.8
arahy.Tifrunner.gnm1.ann1.WJSS10 Arachis hypogaea HOM05D003328 ORTHO05D003722 2.6e-07 60.1 149 34.9
Prupe.3G248600 Prunus persica HOM05D003328 ORTHO05D003722 2.6e-07 60.1 188 30.9
arahy.Tifrunner.gnm1.ann1.JWHM9L Arachis hypogaea HOM05D003328 ORTHO05D003722 3.4e-07 59.7 131 35.1
A10p23250 Brassica napus HOM05D003328 ORTHO05D003722 3.4e-07 59.7 177 33.3
Nitab4.5_0010526g0010 Nicotiana tabacum HOM05D000859 ORTHO05D000668 3.4e-07 59.7 121 28.9
CSS0026689 Camellia sinensis var. sinensis HOM05D000859 ORTHO05D000668 4.5e-07 59.3 125 31.2
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 4.5e-07 59.3 167 29.3
FAN21G1075 Fragaria x ananassa HOM05D000298 ORTHO05D000668 4.5e-07 59.3 159 32.1
MD09G1074600 Malus domestica HOM05D003328 ORTHO05D003722 4.5e-07 59.3 140 31.4
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 4.5e-07 59.3 179 30.7
SEGI_21121 Sequoiadendron giganteum HOM05D000859 ORTHO05D000668 4.5e-07 59.3 134 31.3
BraA10t44393Z Brassica rapa HOM05D003328 ORTHO05D003722 5.9e-07 58.9 210 31.4
CARHR197550 Cardamine hirsuta HOM05D003328 ORTHO05D003722 5.9e-07 58.9 181 34.3
Eucgr.H04602 Eucalyptus grandis HOM05D003105 ORTHO05D003471 5.9e-07 58.9 188 26.1
Thhalv10013771m.g Eutrema salsugineum HOM05D003328 ORTHO05D003722 5.9e-07 58.9 183 30.1
MD16G1014300 Malus domestica HOM05D003328 ORTHO05D003722 5.9e-07 58.9 192 29.7
RcHm_v2.0_Chr5g0031231 Rosa chinensis HOM05D000859 ORTHO05D000668 5.9e-07 58.9 161 28.0
HPP92_009238 Vanilla planifolia HOM05D000859 ORTHO05D000668 5.9e-07 58.9 105 35.2
VMungo0464G1663 Vigna mungo HOM05D003328 ORTHO05D003722 5.9e-07 58.9 169 33.1
CANSAT64G0201 Cannabis sativa HOM05D003328 ORTHO05D003722 7.7e-07 58.5 200 30.5
CiPaw.06G021400 Carya illinoinensis HOM05D000859 ORTHO05D000668 7.7e-07 58.5 131 32.8
Hund26947 Selenicereus undatus HOM05D000859 ORTHO05D000668 7.7e-07 58.5 126 29.4
Sopen03g010780 Solanum pennellii HOM05D003328 ORTHO05D003722 7.7e-07 58.5 124 36.3
CAN.G162.10 Capsicum annuum HOM05D000859 ORTHO05D000668 1.0e-06 58.2 150 34.0
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 1.0e-06 58.2 185 31.4
Nn1g09106 Nelumbo nucifera HOM05D000859 ORTHO05D000668 1.0e-06 58.2 157 31.8
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 1.3e-06 57.8 174 33.3
DCAR_014241 Daucus carota HOM05D000859 ORTHO05D000668 1.3e-06 57.8 124 29.0
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.3e-06 57.8 133 36.1
MD09G1075400 Malus domestica HOM05D003328 ORTHO05D003722 1.3e-06 57.8 140 31.4
BcaC03g18449 Brassica carinata HOM05D003328 ORTHO05D003722 1.7e-06 57.4 165 33.3
BolC2t06720H Brassica oleracea HOM05D003328 ORTHO05D003722 1.7e-06 57.4 165 33.3
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 1.7e-06 57.4 203 31.0
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 1.7e-06 57.4 170 30.6
Psat5g136720 Pisum sativum HOM05D000859 ORTHO05D000668 1.7e-06 57.4 125 32.0
A02p03220 Brassica napus HOM05D003328 ORTHO05D003722 2.2e-06 57.0 169 34.3
Cfa015920 Carpinus fangiana HOM05D000859 ORTHO05D000668 2.2e-06 57.0 129 31.8
Gohir.A04G041300 Gossypium hirsutum HOM05D000859 ORTHO05D000668 2.2e-06 57.0 111 32.4
Hma1.2p1_0448F.1_g154830 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 2.2e-06 57.0 207 29.0
MD09G1075500 Malus domestica HOM05D003328 ORTHO05D003722 2.2e-06 57.0 192 30.7
Sp6g28340 Schrenkiella parvula HOM05D003328 ORTHO05D003722 2.2e-06 57.0 176 33.5
ATR0751G230 Amborella trichopoda HOM05D000859 ORTHO05D000668 2.9e-06 56.6 125 30.4
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.9e-06 56.6 120 31.7
Gohir.D05G341733 Gossypium hirsutum HOM05D000859 ORTHO05D000668 2.9e-06 56.6 111 32.4
Gohir.D05G341766 Gossypium hirsutum HOM05D000859 ORTHO05D000668 2.9e-06 56.6 111 32.4
Gohir.D05G341800 Gossypium hirsutum HOM05D000859 ORTHO05D000668 2.9e-06 56.6 111 32.4
Gohir.D05G341850 Gossypium hirsutum HOM05D000859 ORTHO05D000668 2.9e-06 56.6 111 32.4
QL03p051089 Quercus lobata HOM05D003105 ORTHO05D003471 2.9e-06 56.6 195 27.2
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.9e-06 56.6 140 32.1
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 3.8e-06 56.2 120 31.7
Gohir.A04G041800 Gossypium hirsutum HOM05D000859 ORTHO05D000668 3.8e-06 56.2 112 33.9
Solyc04g054810.3 Solanum lycopersicum HOM05D000859 ORTHO05D000668 3.8e-06 56.2 119 30.3
BraA02t05293Z Brassica rapa HOM05D003328 ORTHO05D003722 5.0e-06 55.8 204 30.9
CSS0003048 Camellia sinensis var. sinensis HOM05D000859 ORTHO05D000668 5.0e-06 55.8 127 31.5
Haze_00575 Corylus avellana HOM05D000859 ORTHO05D000668 5.0e-06 55.8 129 31.0
Eucgr.F00490 Eucalyptus grandis HOM05D000859 ORTHO05D000668 5.0e-06 55.8 127 28.3
Nitab4.5_0000246g0210 Nicotiana tabacum HOM05D000859 ORTHO05D000668 5.0e-06 55.8 106 35.8
Migut.H01991 Erythranthe guttata HOM05D000859 ORTHO05D000668 6.5e-06 55.5 106 36.8
Lalb_Chr02g0158801 Lupinus albus HOM05D003328 ORTHO05D003722 6.5e-06 55.5 175 32.0
Nitab4.5_0000715g0120 Nicotiana tabacum HOM05D000859 ORTHO05D000668 6.5e-06 55.5 124 29.0
PGR042G0547 Punica granatum HOM05D000859 ORTHO05D000668 6.5e-06 55.5 104 32.7
Sopen04g024610 Solanum pennellii HOM05D000859 ORTHO05D000668 6.5e-06 55.5 119 30.3
PGSC0003DMG400016739 Solanum tuberosum HOM05D000859 ORTHO05D000668 6.5e-06 55.5 137 32.1
Atru.chr2.2397 Acer truncatum HOM05D000859 ORTHO05D000668 8.5e-06 55.1 116 31.0
CSS0031343 Camellia sinensis var. sinensis HOM05D000859 ORTHO05D000668 8.5e-06 55.1 102 32.4
Cc07_g04510 Coffea canephora HOM05D003328 ORTHO05D003722 8.5e-06 55.1 205 30.7
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 8.5e-06 55.1 144 26.4
FvH4_6g46330 Fragaria vesca HOM05D003328 ORTHO05D003722 8.5e-06 55.1 131 31.3


User provided reference genes

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