Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 8.3e-263 909.8 459 100.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 3.9e-79 299.7 322 48.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.4e-76 291.2 322 46.6
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.8e-76 290.8 323 46.4
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 9.0e-76 288.5 323 45.2
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.4e-75 286.6 323 48.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.0e-74 285.0 324 46.3
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.3e-74 284.6 323 45.5
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.3e-74 284.6 323 45.2
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.7e-74 284.3 323 46.1
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.0e-74 282.7 328 45.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 8.5e-74 282.0 323 46.7
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.4e-73 281.2 323 45.2
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.9e-73 280.8 323 44.6
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.9e-73 280.8 323 45.5
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.5e-73 280.4 324 43.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.2e-73 278.9 324 45.1
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.2e-72 278.1 326 44.5
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.2e-72 278.1 323 45.5
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.1e-72 277.3 328 44.2
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.7e-72 276.9 324 45.4
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.6e-72 276.6 325 44.9
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 6.1e-72 275.8 324 45.7
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 7.9e-72 275.4 323 45.2
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.0e-71 275.0 323 46.4
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 2.3e-71 273.9 323 45.8
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.3e-71 273.9 326 45.4
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.9e-71 273.1 323 45.2
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 8.8e-71 271.9 324 44.4
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 8.8e-71 271.9 323 44.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 3.3e-70 270.0 324 44.1
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.3e-70 270.0 341 43.1
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.3e-70 270.0 323 44.9
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 3.3e-70 270.0 323 44.0
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 5.7e-70 269.2 324 45.1
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 5.7e-70 269.2 325 44.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 7.4e-70 268.9 323 44.0
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 9.7e-70 268.5 324 46.3
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.7e-69 267.7 323 44.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 2.2e-69 267.3 323 44.9
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.2e-69 267.3 323 42.1
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.8e-69 266.9 327 43.1
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 4.8e-69 266.2 324 44.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.1e-68 265.0 324 44.4
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.4e-68 264.6 324 44.4
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 3.1e-68 263.5 323 44.9
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 5.3e-68 262.7 325 44.3
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 6.9e-68 262.3 324 43.2
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.1e-68 261.9 324 44.8
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-67 261.2 324 44.4
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.5e-67 261.2 324 44.4
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.0e-67 260.8 324 44.1
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-67 260.0 324 44.1
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.7e-67 258.8 308 45.5
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.3e-66 258.1 324 42.6
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.7e-66 257.7 323 43.7
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.2e-66 257.3 341 44.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.2e-66 257.3 323 45.2
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.9e-66 256.9 324 42.0
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.9e-66 256.9 338 43.2
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 5.0e-66 256.1 328 42.7
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.1e-65 255.0 364 40.4
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.9e-65 254.2 327 43.1
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 4.2e-65 253.1 325 44.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 5.5e-65 252.7 323 44.0
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 5.5e-65 252.7 310 43.5
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.6e-64 251.1 323 42.4
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 4.7e-64 249.6 338 39.9
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 7.9e-64 248.8 282 45.4
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 7.9e-64 248.8 334 43.7
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.8e-63 247.7 324 43.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.3e-63 247.3 323 44.0
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 3.0e-63 246.9 310 42.6
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 3.0e-63 246.9 392 38.0
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 3.9e-63 246.5 328 40.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.6e-62 243.8 322 42.5
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.3e-61 241.5 379 38.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.3e-61 241.5 301 44.5
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.8e-61 240.4 324 42.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 4.8e-61 239.6 323 43.0
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 4.8e-61 239.6 326 41.4
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 8.2e-61 238.8 299 44.1
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.1e-60 238.4 323 42.1
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.4e-60 238.0 283 43.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.8e-60 237.7 329 39.8
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 3.1e-60 236.9 323 41.8
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 3.1e-60 236.9 323 41.8
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.6e-59 233.8 309 41.1
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 5.0e-58 229.6 326 40.8
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.9e-57 227.6 274 45.3
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.5e-57 227.3 327 39.1
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.5e-57 226.1 278 42.8
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 7.2e-57 225.7 324 40.7
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 9.4e-57 225.3 333 40.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 9.4e-57 225.3 326 38.7
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.1e-56 224.2 326 39.0
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.7e-56 223.8 362 37.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.4e-55 221.5 333 39.6
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.8e-55 221.1 330 40.0
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.3e-55 220.7 370 38.1
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 6.7e-55 219.2 362 35.6
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 8.8e-55 218.8 325 37.8
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-54 218.4 349 37.8
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.4e-54 215.7 285 41.4
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.3e-53 214.9 250 44.4
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.8e-53 213.8 321 38.9
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-52 211.1 359 37.6
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.0e-51 207.6 331 39.3
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.0e-51 207.6 330 38.8
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.9e-51 206.1 234 45.7
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.8e-50 203.4 317 36.9
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 3.8e-50 203.4 323 37.5
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.2e-49 199.1 268 40.7
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.0e-47 195.3 323 37.5
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.8e-47 192.2 291 39.2
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.2e-46 191.8 326 37.4
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.0e-46 191.0 305 39.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.6e-46 190.7 245 41.6
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 3.3e-46 190.3 352 33.5
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 9.7e-46 188.7 215 45.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.4e-44 184.9 301 37.2
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.6e-43 181.4 261 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 2.0e-43 181.0 207 44.9
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.3e-39 167.5 305 33.1
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.3e-39 167.5 211 43.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.2e-39 166.4 282 37.2
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.0e-38 164.5 208 44.2
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.2e-37 161.0 309 35.3
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.6e-35 154.8 211 36.5
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-32 144.4 334 32.9
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-31 142.1 170 42.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-31 141.7 317 33.4
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.4e-28 131.7 173 41.0
SEGI_27558 Sequoiadendron giganteum HOM05D000003 ORTHO05D006441 5.9e-27 126.3 107 60.7
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.9e-26 124.0 167 40.7
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.8e-26 123.6 148 47.3
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.1e-25 122.1 144 43.8
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.9e-25 121.3 165 38.2
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-25 120.9 161 41.6
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 3.6e-24 117.1 141 43.3
SEGI_34904 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 2.3e-23 114.4 116 51.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.8e-23 112.8 248 33.1
SEGI_05670 Sequoiadendron giganteum HOM05D000003 ORTHO05D006441 2.0e-22 111.3 110 53.6
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.6e-19 101.7 127 42.5
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 6.0e-19 99.8 114 44.7
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.8e-16 90.9 103 46.6
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 4.7e-16 90.1 85 54.1
SEGI_28975 Sequoiadendron giganteum HOM05D000003 ORTHO05D006441 4.7e-16 90.1 78 57.7
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.1e-15 87.4 83 50.6
SEGI_33456 Sequoiadendron giganteum HOM05D000003 ORTHO05D006441 5.2e-15 86.7 96 47.9
SEGI_10125 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 3.4e-14 84.0 105 46.7
SEGI_03724 Sequoiadendron giganteum HOM05D000003 ORTHO05D006441 3.7e-13 80.5 50 74.0
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 2.4e-12 77.8 103 38.8
SEGI_17031 Sequoiadendron giganteum HOM05D000003 ORTHO05D000044 3.5e-11 73.9 110 41.8
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.7e-10 71.6 103 37.9
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 8.6e-10 69.3 78 42.3
SEGI_03025 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 1.1e-09 68.9 94 45.7
SEGI_33308 Sequoiadendron giganteum HOM05D000059 ORTHO05D002627 3.3e-09 67.4 116 35.3
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.6e-08 65.1 96 39.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.7e-08 63.5 55 52.7
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 8.1e-08 62.8 74 47.3
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.8e-07 61.6 74 47.3
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.8e-07 61.6 74 47.3
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.8e-07 61.6 126 30.2
SEGI_18316 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 6.8e-07 59.7 116 35.3
SEGI_02711 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 2.0e-06 58.2 108 36.1
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 9.9e-06 55.8 48 56.2


User provided reference genes

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