Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39426 Sequoiadendron giganteum HOM05D007102 ORTHO05D008950 4.8e-54 214.2 102 100.0
Cc01_g08950 Coffea canephora HOM05D007102 ORTHO05D008950 2.0e-15 85.9 47 78.7
Thecc.09G366000 Theobroma cacao HOM05D007102 ORTHO05D008950 2.6e-15 85.5 47 80.9
Nn2g10214 Nelumbo nucifera HOM05D007102 ORTHO05D008950 3.4e-15 85.1 47 78.7
Gohir.D13G017200 Gossypium hirsutum HOM05D007102 ORTHO05D008950 5.8e-15 84.3 47 78.7
Gorai.013G019100 Gossypium raimondii HOM05D007102 ORTHO05D008950 5.8e-15 84.3 47 78.7
Rhsim01G0245100 Rhododendron simsii HOM05D007102 ORTHO05D008950 5.8e-15 84.3 47 76.6
PSO266G0014 Papaver somniferum HOM05D007102 ORTHO05D008950 7.5e-15 84.0 46 82.6
PSO384G1696 Papaver somniferum HOM05D007102 ORTHO05D008950 7.5e-15 84.0 46 82.6
vmacro14656 Vaccinium macrocarpon HOM05D007102 ORTHO05D008950 7.5e-15 84.0 47 76.6
Ciclev10002429m.g Citrus clementina HOM05D007102 ORTHO05D008950 1.3e-14 83.2 46 80.4
Manes.18G123900 Manihot esculenta HOM05D007102 ORTHO05D008950 1.3e-14 83.2 49 75.5
TAR624G0943 Trochodendron aralioides HOM05D007102 ORTHO05D008950 1.3e-14 83.2 45 82.2
Duzib168G2173 Durio zibethinus HOM05D007102 ORTHO05D008950 1.7e-14 82.8 47 78.7
CSS0027114 Camellia sinensis var. sinensis HOM05D007102 ORTHO05D008950 2.2e-14 82.4 47 76.6
PGR042G3056 Punica granatum HOM05D007102 ORTHO05D008950 2.2e-14 82.4 46 80.4
Cfa011824 Carpinus fangiana HOM05D007102 ORTHO05D008950 2.9e-14 82.0 47 78.7
Haze_24461 Corylus avellana HOM05D007102 ORTHO05D008950 2.9e-14 82.0 47 78.7
MD03G1047200 Malus domestica HOM05D007102 ORTHO05D008950 2.9e-14 82.0 47 78.7
MD11G1049700 Malus domestica HOM05D007102 ORTHO05D008950 2.9e-14 82.0 47 78.7
Nitab4.5_0001856g0010 Nicotiana tabacum HOM05D007102 ORTHO05D008950 2.9e-14 82.0 42 88.1
Glyma.11G201200 Glycine max HOM05D007102 ORTHO05D008950 3.7e-14 81.6 48 75.0
Glyma.18G049600 Glycine max HOM05D007102 ORTHO05D008950 3.7e-14 81.6 48 75.0
Lalb_Chr20g0117241 Lupinus albus HOM05D007102 ORTHO05D008950 3.7e-14 81.6 48 75.0
Phvul.006G081700 Phaseolus vulgaris HOM05D007102 ORTHO05D008950 3.7e-14 81.6 48 75.0
VMungo0540G2371 Vigna mungo HOM05D007102 ORTHO05D008950 3.7e-14 81.6 48 77.1
Actinidia23827 Actinidia chinensis HOM05D007102 ORTHO05D008950 4.9e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.6T6LBL Arachis hypogaea HOM05D007102 ORTHO05D008950 4.9e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.S4JT24 Arachis hypogaea HOM05D007102 ORTHO05D008950 4.9e-14 81.3 47 76.6
CANSAT54G0300 Cannabis sativa HOM05D007102 ORTHO05D008950 4.9e-14 81.3 47 76.6
Ca_15087_v3 Cicer arietinum L. HOM05D007102 ORTHO05D008950 4.9e-14 81.3 48 75.0
Prupe.6G038400 Prunus persica HOM05D007102 ORTHO05D008950 4.9e-14 81.3 47 78.7
MSTRG.21273 Avicennia marina HOM05D007102 ORTHO05D008950 6.4e-14 80.9 45 75.6
MELO3C019595.2 Cucumis melo HOM05D007102 ORTHO05D008950 6.4e-14 80.9 42 85.7
CsaV3_6G013250 Cucumis sativus L. HOM05D007102 ORTHO05D008950 6.4e-14 80.9 42 85.7
Migut.D00799 Erythranthe guttata HOM05D007102 ORTHO05D008950 6.4e-14 80.9 45 75.6
Hma1.2p1_0170F.1_g075400 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 6.4e-14 80.9 47 76.6
Mapoly0073s0080 Marchantia polymorpha HOM05D007102 ORTHO05D008950 6.4e-14 80.9 44 81.8
RcHm_v2.0_Chr5g0073911 Rosa chinensis HOM05D007102 ORTHO05D008950 6.4e-14 80.9 48 75.0
GSVIVG01024526001 Vitis vinifera HOM05D007102 ORTHO05D008950 6.4e-14 80.9 47 76.6
Lsat_1_v5_gn_8_99200 Lactuca sativa HOM05D007102 ORTHO05D008950 8.3e-14 80.5 49 73.5
Potri.013G160600 Populus trichocarpa HOM05D007102 ORTHO05D008950 8.3e-14 80.5 46 76.1
unitig_0.g217 Utricularia gibba HOM05D007102 ORTHO05D008950 8.3e-14 80.5 48 70.8
Aqoxy5G01440 Aquilegia oxysepala HOM05D007102 ORTHO05D008950 1.1e-13 80.1 47 74.5
AUR62027864 Chenopodium quinoa HOM05D007102 ORTHO05D008950 1.1e-13 80.1 48 75.0
QL01p023619 Quercus lobata HOM05D007102 ORTHO05D008950 1.1e-13 80.1 47 76.6
Actinidia34510 Actinidia chinensis HOM05D007102 ORTHO05D008950 1.4e-13 79.7 47 74.5
EL10Ac1g01074 Beta vulgaris HOM05D007102 ORTHO05D008950 1.4e-13 79.7 42 83.3
CiPaw.13G061600 Carya illinoinensis HOM05D007102 ORTHO05D008950 1.4e-13 79.7 42 83.3
AUR62019027 Chenopodium quinoa HOM05D007102 ORTHO05D008950 1.4e-13 79.7 42 83.3
Eucgr.J01847 Eucalyptus grandis HOM05D007102 ORTHO05D008950 1.4e-13 79.7 46 76.1
Medtr3g062890 Medicago truncatula HOM05D007102 ORTHO05D008950 1.4e-13 79.7 48 72.9
HanXRQChr16g0508431 Helianthus annuus HOM05D007102 ORTHO05D008950 1.8e-13 79.3 47 74.5
Peaxi162Scf00788g00047 Petunia axillaris HOM05D007102 ORTHO05D008950 1.8e-13 79.3 42 83.3
Psat5g145240 Pisum sativum HOM05D007102 ORTHO05D008950 1.8e-13 79.3 48 72.9
TWI31G0907 Tripterygium wilfordii HOM05D007102 ORTHO05D008950 1.8e-13 79.3 42 83.3
CAN.G749.40 Capsicum annuum HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
CDE07G1209 Ceratophyllum demersum HOM05D007102 ORTHO05D008950 2.4e-13 79.0 45 77.8
FvH4_3g41140 Fragaria vesca HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
FAN11G2493 Fragaria x ananassa HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
FAN16G1418 Fragaria x ananassa HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
FAN21G1718 Fragaria x ananassa HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
FAN25G2933 Fragaria x ananassa HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
Lj6g0026798 Lotus japonicus HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
Sopen09g032040 Solanum pennellii HOM05D007102 ORTHO05D008950 2.4e-13 79.0 42 83.3
Carub.0008s1880 Capsella rubella HOM05D007102 ORTHO05D008950 3.2e-13 78.6 47 72.3
MBI15_g05591_MAGBIO Magnolia biondii HOM05D007102 ORTHO05D008950 3.2e-13 78.6 46 76.1
PGSC0003DMG400006084 Solanum tuberosum HOM05D007102 ORTHO05D008950 3.2e-13 78.6 42 83.3
Dinv12295 Davidia involucrata HOM05D007102 ORTHO05D008950 4.1e-13 78.2 42 81.0
Sabra13G0128500 Salix brachista HOM05D007102 ORTHO05D008950 4.1e-13 78.2 46 73.9
Ah.05g170720 Amaranthus hybridus HOM05D007102 ORTHO05D008950 5.4e-13 77.8 42 81.0
ECA236G5009 Erigeron canadensis HOM05D007102 ORTHO05D008950 5.4e-13 77.8 47 72.3
AT5G58260 Arabidopsis thaliana HOM05D007102 ORTHO05D008950 9.2e-13 77.0 47 72.3
Sp6g19920 Schrenkiella parvula HOM05D007102 ORTHO05D008950 9.2e-13 77.0 47 72.3
AL8G34360 Arabidopsis lyrata HOM05D007102 ORTHO05D008950 1.2e-12 76.6 47 72.3
BcaB01g04537 Brassica carinata HOM05D007102 ORTHO05D008950 1.2e-12 76.6 47 72.3
BcaB01g04546 Brassica carinata HOM05D007102 ORTHO05D008950 1.2e-12 76.6 47 72.3
BolC3t13892H Brassica oleracea HOM05D007102 ORTHO05D008950 1.2e-12 76.6 47 72.3
THA.LOC104819153 Tarenaya hassleriana HOM05D007102 ORTHO05D008950 1.2e-12 76.6 47 70.2
TPR.G13817 Trifolium pratense HOM05D007102 ORTHO05D008950 1.2e-12 76.6 42 81.0
BcaB01g04483 Brassica carinata HOM05D007102 ORTHO05D008950 1.6e-12 76.3 47 70.2
A03p12340 Brassica napus HOM05D007102 ORTHO05D008950 1.6e-12 76.3 47 70.2
C03p14490 Brassica napus HOM05D007102 ORTHO05D008950 1.6e-12 76.3 47 70.2
BraA03t10546Z Brassica rapa HOM05D007102 ORTHO05D008950 1.6e-12 76.3 47 70.2
Solyc09g083150.4 Solanum lycopersicum HOM05D007102 ORTHO05D008950 1.6e-12 76.3 40 85.0
CARHR272050 Cardamine hirsuta HOM05D007102 ORTHO05D008950 2.0e-12 75.9 45 75.6
Lj2C1106T0 Lonicera japonica HOM05D007102 ORTHO05D008950 2.0e-12 75.9 44 72.7
Pp3c3_15360 Physcomitrium patens HOM05D007102 ORTHO05D008950 2.0e-12 75.9 48 64.6
Os01g0882500 Oryza sativa ssp. japonica HOM05D007102 ORTHO05D008950 2.7e-12 75.5 42 76.2
Hund16865 Selenicereus undatus HOM05D007102 ORTHO05D008950 4.6e-12 74.7 42 78.6
Zm00001eb145680 Zea mays HOM05D007102 ORTHO05D008950 1.0e-11 73.6 42 73.8
DCAR_021104 Daucus carota HOM05D007102 ORTHO05D008950 3.9e-11 71.6 40 77.5
CBR_g36846 Chara braunii HOM05D007102 ORTHO05D008950 5.6e-10 67.8 49 57.1
SMO119G0373 Selaginella moellendorffii HOM05D007102 ORTHO05D008950 5.6e-10 67.8 40 75.0
ClCG02G018940 Citrullus lanatus HOM05D007102 ORTHO05D008950 5.8e-07 57.8 29 89.7
Nitab4.5_0007585g0040 Nicotiana tabacum HOM05D007102 ORTHO05D008950 7.5e-07 57.4 29 89.7
Cpa.g.sc2.262 Carica papaya HOM05D007102 ORTHO05D008950 1.3e-06 56.6 29 86.2
Atru.chr10.2354 Acer truncatum HOM05D007102 ORTHO05D008950 2.9e-06 55.5 29 86.2


User provided reference genes

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