Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.0e-142 507.7 241 100.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.1e-112 408.3 220 87.7
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.9e-97 359.0 220 80.0
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.5e-42 175.6 157 55.4
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 4.5e-42 175.6 208 43.8
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 5.9e-42 175.3 228 43.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.7e-41 173.7 157 53.5
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.7e-41 173.7 157 53.5
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 2.2e-41 173.3 157 54.8
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.9e-41 172.9 157 52.9
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.1e-40 171.0 188 43.6
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.2e-40 169.1 155 49.7
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 4.2e-40 169.1 160 51.2
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.5e-40 168.7 157 54.8
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 5.5e-40 168.7 207 42.0
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 5.5e-40 168.7 240 37.9
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 5.5e-40 168.7 220 43.2
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 7.2e-40 168.3 235 41.3
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 9.3e-40 167.9 157 54.1
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 9.3e-40 167.9 231 41.1
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.2e-39 167.5 254 38.2
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.2e-39 167.5 164 50.0
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.6e-39 167.2 219 40.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.1e-39 166.8 161 50.3
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.1e-39 166.8 155 54.2
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.6e-39 166.0 239 38.5
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 3.6e-39 166.0 211 40.8
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.6e-39 166.0 164 50.0
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.6e-39 166.0 234 41.9
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.6e-39 166.0 161 47.8
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 4.6e-39 165.6 233 36.9
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 4.6e-39 165.6 204 41.7
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 4.6e-39 165.6 153 54.2
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.6e-39 165.6 156 49.4
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 6.1e-39 165.2 157 51.6
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 7.9e-39 164.9 154 51.9
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 7.9e-39 164.9 171 48.0
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 7.9e-39 164.9 164 49.4
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 7.9e-39 164.9 164 49.4
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.0e-38 164.5 157 51.6
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.0e-38 164.5 153 50.3
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.0e-38 164.5 153 50.3
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.0e-38 164.5 240 37.5
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-38 164.1 157 52.9
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.3e-38 164.1 146 54.1
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.3e-38 164.1 164 48.8
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.3e-38 164.1 208 41.3
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.3e-38 163.3 197 44.2
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 2.3e-38 163.3 251 37.8
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.3e-38 163.3 233 38.2
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 3.0e-38 162.9 225 37.8
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.0e-38 162.9 146 54.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.0e-38 162.9 203 41.9
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 3.0e-38 162.9 156 48.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.0e-38 162.9 149 51.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 5.1e-38 162.2 163 48.5
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 5.1e-38 162.2 159 49.7
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 5.1e-38 162.2 169 47.3
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 6.7e-38 161.8 233 38.6
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.7e-38 161.4 153 51.6
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 8.7e-38 161.4 228 38.6
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-37 161.0 163 47.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.1e-37 161.0 149 54.4
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.1e-37 161.0 204 41.2
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.5e-37 160.6 140 55.7
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.5e-37 160.6 157 49.7
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.5e-37 160.6 259 36.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.5e-37 160.6 251 36.7
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-37 160.6 166 50.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.5e-37 160.6 146 53.4
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.9e-37 160.2 170 45.3
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.5e-37 159.8 153 52.3
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 3.3e-37 159.5 190 42.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 3.3e-37 159.5 236 35.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 7.4e-37 158.3 146 52.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 9.7e-37 157.9 233 37.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 9.7e-37 157.9 219 38.8
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.3e-36 157.5 157 47.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.3e-36 157.5 153 49.7
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.3e-36 157.5 157 49.7
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-36 157.1 186 44.6
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.6e-36 157.1 172 48.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.2e-36 156.8 164 48.8
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 2.2e-36 156.8 161 47.8
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.2e-36 156.8 169 46.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 4.8e-36 155.6 146 51.4
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 8.2e-36 154.8 164 48.2
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.1e-35 154.5 265 34.3
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.1e-35 154.5 265 34.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.1e-35 154.5 148 50.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.4e-35 154.1 146 52.7
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.8e-35 153.7 148 48.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.1e-35 152.5 155 47.7
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 4.1e-35 152.5 231 35.5
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 5.3e-35 152.1 146 52.1
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 6.9e-35 151.8 132 55.3
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.2e-34 151.0 164 47.0
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-34 150.6 133 53.4
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.0e-34 150.2 157 49.7
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 7.7e-34 148.3 138 54.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 7.7e-34 148.3 132 54.5
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.3e-33 147.5 204 40.7
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.3e-33 147.5 123 53.7
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.3e-33 147.5 156 46.2
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.7e-33 147.1 131 54.2
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 2.9e-33 146.4 143 52.4
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 5.0e-33 145.6 203 40.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.0e-33 145.6 203 40.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-32 144.1 98 67.3
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 4.2e-32 142.5 203 40.9
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 5.5e-32 142.1 149 48.3
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 9.4e-32 141.4 142 50.7
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 9.4e-32 141.4 204 38.7
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.2e-31 141.0 132 51.5
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.1e-31 140.2 135 54.1
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 7.9e-31 138.3 191 41.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 7.9e-31 138.3 135 51.9
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 5.7e-29 132.1 231 36.4
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 3.4e-26 122.9 129 49.6
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 7.2e-24 115.2 81 63.0
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 7.9e-23 111.7 128 43.0
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.4e-19 100.9 104 44.2
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 3.5e-18 96.3 77 53.2
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 6.5e-17 92.0 100 47.0
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.1e-16 91.3 107 44.9
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.2e-16 89.7 146 37.0
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.1e-11 73.2 82 45.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 5.3e-11 72.4 49 65.3
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 5.0e-09 65.9 62 48.4


User provided reference genes

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